miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11025 5' -57.7 NC_002794.1 + 148373 0.67 0.820691
Target:  5'- aUCG-GCAGCgGGgCCAUCUgGAGCg- -3'
miRNA:   3'- aAGCuUGUCG-CCgGGUAGAgCUCGga -5'
11025 5' -57.7 NC_002794.1 + 53182 0.67 0.820691
Target:  5'- cUCG-GCAG-GGCCCAgC-CGAGCCa -3'
miRNA:   3'- aAGCuUGUCgCCGGGUaGaGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 147041 0.67 0.820691
Target:  5'- -aCGAAgccguCGGCGGCCgGUCUaaggacgGAGCCg -3'
miRNA:   3'- aaGCUU-----GUCGCCGGgUAGAg------CUCGGa -5'
11025 5' -57.7 NC_002794.1 + 111748 0.67 0.812156
Target:  5'- gUCGAGCuggcgccgcGCGGCgCCGUCggggCGGGCUc -3'
miRNA:   3'- aAGCUUGu--------CGCCG-GGUAGa---GCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 189546 0.67 0.812156
Target:  5'- gUCGAuccaccacAUGGCGGUCCcgCUCGgucGGCCg -3'
miRNA:   3'- aAGCU--------UGUCGCCGGGuaGAGC---UCGGa -5'
11025 5' -57.7 NC_002794.1 + 156498 0.67 0.803462
Target:  5'- -cCGGuuUAGCGGCCCGUUgaucgCGAGUCc -3'
miRNA:   3'- aaGCUu-GUCGCCGGGUAGa----GCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 149747 0.67 0.803462
Target:  5'- gUgGAGCGGCGGgaCCgcuGUCUCG-GCCUg -3'
miRNA:   3'- aAgCUUGUCGCCg-GG---UAGAGCuCGGA- -5'
11025 5' -57.7 NC_002794.1 + 101486 0.67 0.803462
Target:  5'- -cCGAAacgcCGGCGGCCgGUC-CGAGCg- -3'
miRNA:   3'- aaGCUU----GUCGCCGGgUAGaGCUCGga -5'
11025 5' -57.7 NC_002794.1 + 26648 0.67 0.803462
Target:  5'- -cCGGACGGCGGCCgG-CUCGucGGCg- -3'
miRNA:   3'- aaGCUUGUCGCCGGgUaGAGC--UCGga -5'
11025 5' -57.7 NC_002794.1 + 13885 0.67 0.802584
Target:  5'- -cCGAGCGccgcccuGUGGUUCGUCUUGAGUCUg -3'
miRNA:   3'- aaGCUUGU-------CGCCGGGUAGAGCUCGGA- -5'
11025 5' -57.7 NC_002794.1 + 129234 0.67 0.794617
Target:  5'- -gCGAACgGGCGGCuCCGgcggaCUCGGGUCg -3'
miRNA:   3'- aaGCUUG-UCGCCG-GGUa----GAGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 150847 0.67 0.794617
Target:  5'- cUCcAGCGGCGGCCgCGUCUac-GCCUa -3'
miRNA:   3'- aAGcUUGUCGCCGG-GUAGAgcuCGGA- -5'
11025 5' -57.7 NC_002794.1 + 183242 0.68 0.78563
Target:  5'- -cCGAcacGCGGCGGCCCGccaCUCGguacaguacAGCCa -3'
miRNA:   3'- aaGCU---UGUCGCCGGGUa--GAGC---------UCGGa -5'
11025 5' -57.7 NC_002794.1 + 32163 0.68 0.776508
Target:  5'- -cCGAGCGGUGGCCCGcCU--GGCCc -3'
miRNA:   3'- aaGCUUGUCGCCGGGUaGAgcUCGGa -5'
11025 5' -57.7 NC_002794.1 + 282 0.68 0.776508
Target:  5'- --aGGACGGCGGCCCugg-CGcGCCg -3'
miRNA:   3'- aagCUUGUCGCCGGGuagaGCuCGGa -5'
11025 5' -57.7 NC_002794.1 + 127814 0.68 0.776508
Target:  5'- -cCGAGCgAGC-GCCCGUCgucggccCGAGCCg -3'
miRNA:   3'- aaGCUUG-UCGcCGGGUAGa------GCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 189036 0.68 0.770975
Target:  5'- cUCGAccgccaGCGGCgGGCUgcgcgucgcguacggCGUCUCGGGCCg -3'
miRNA:   3'- aAGCU------UGUCG-CCGG---------------GUAGAGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 130591 0.68 0.757898
Target:  5'- gUCGGGCAGCGcuauccGCCgAUCgUGGGCCg -3'
miRNA:   3'- aAGCUUGUCGC------CGGgUAGaGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 41254 0.68 0.757898
Target:  5'- -cCGAcgcCGGCGGCCCGUCgUCGcGCUc -3'
miRNA:   3'- aaGCUu--GUCGCCGGGUAG-AGCuCGGa -5'
11025 5' -57.7 NC_002794.1 + 187676 0.68 0.742695
Target:  5'- aUCGGGCgaugcgggucgAGCGGCCCGUUggccgucuccgucaCGGGCCg -3'
miRNA:   3'- aAGCUUG-----------UCGCCGGGUAGa-------------GCUCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.