miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11025 5' -57.7 NC_002794.1 + 183153 0.68 0.738855
Target:  5'- -gCGGACAcGCGGCCgGgcugCcCGAGCCg -3'
miRNA:   3'- aaGCUUGU-CGCCGGgUa---GaGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 116460 0.68 0.738855
Target:  5'- -aCGAAgAGCGGCCgGUuCUUGGuGCCg -3'
miRNA:   3'- aaGCUUgUCGCCGGgUA-GAGCU-CGGa -5'
11025 5' -57.7 NC_002794.1 + 86841 0.68 0.738855
Target:  5'- aUCGGGuCGGCGGCCCcgCcgggaUUGGGUCUg -3'
miRNA:   3'- aAGCUU-GUCGCCGGGuaG-----AGCUCGGA- -5'
11025 5' -57.7 NC_002794.1 + 79689 0.69 0.729193
Target:  5'- cUCGAGCAGCucgGGCCgCcgCUCGuGuCCUa -3'
miRNA:   3'- aAGCUUGUCG---CCGG-GuaGAGCuC-GGA- -5'
11025 5' -57.7 NC_002794.1 + 131874 0.69 0.729193
Target:  5'- cUUGGGCGccGCGGCCuCAUCUCG-GUCg -3'
miRNA:   3'- aAGCUUGU--CGCCGG-GUAGAGCuCGGa -5'
11025 5' -57.7 NC_002794.1 + 180621 0.69 0.71945
Target:  5'- -aCGAcACGGCGGCCCAcccgcgCUccagacgaCGAGCCa -3'
miRNA:   3'- aaGCU-UGUCGCCGGGUa-----GA--------GCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 37960 0.69 0.71945
Target:  5'- cUCGcuCGGCGGCUCGUgguaCGAGCCg -3'
miRNA:   3'- aAGCuuGUCGCCGGGUAga--GCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 104260 0.69 0.689819
Target:  5'- cUCGGGCAGCcgcucggccGGCaCCGugccgaacaggaUCUCGGGCCg -3'
miRNA:   3'- aAGCUUGUCG---------CCG-GGU------------AGAGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 53220 0.69 0.689819
Target:  5'- gUCGAGCGGCgaaacGGUCCGUCcUCG-GCCc -3'
miRNA:   3'- aAGCUUGUCG-----CCGGGUAG-AGCuCGGa -5'
11025 5' -57.7 NC_002794.1 + 82450 0.7 0.679838
Target:  5'- cUCGGcACGGuCGGCCCGacCUCGAcGCCg -3'
miRNA:   3'- aAGCU-UGUC-GCCGGGUa-GAGCU-CGGa -5'
11025 5' -57.7 NC_002794.1 + 114720 0.7 0.669818
Target:  5'- -gCGGcgGCGGCGGCuCCGgguUCgUCGAGCCg -3'
miRNA:   3'- aaGCU--UGUCGCCG-GGU---AG-AGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 25536 0.7 0.669818
Target:  5'- cUCGAugAGcCGGCCaGUCUC-AGCCg -3'
miRNA:   3'- aAGCUugUC-GCCGGgUAGAGcUCGGa -5'
11025 5' -57.7 NC_002794.1 + 19964 0.7 0.669818
Target:  5'- cUUCGAGCuGCGGCCgCccUUCGGGCUg -3'
miRNA:   3'- -AAGCUUGuCGCCGG-GuaGAGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 131565 0.7 0.669818
Target:  5'- gUCGGcGCGGC-GCCCGUCUUGAcgGCCUc -3'
miRNA:   3'- aAGCU-UGUCGcCGGGUAGAGCU--CGGA- -5'
11025 5' -57.7 NC_002794.1 + 40487 0.7 0.659768
Target:  5'- aUCGAACGGcCGGCgCucgccgCUCGAGUCa -3'
miRNA:   3'- aAGCUUGUC-GCCGgGua----GAGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 46241 0.7 0.648689
Target:  5'- cUCGc-CGGCGGCUCGUCcgcuuccUCGGGCCg -3'
miRNA:   3'- aAGCuuGUCGCCGGGUAG-------AGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 50766 0.71 0.619434
Target:  5'- -cCGGGCGGCGGCgacggcgCGUCUCGGGCg- -3'
miRNA:   3'- aaGCUUGUCGCCGg------GUAGAGCUCGga -5'
11025 5' -57.7 NC_002794.1 + 14492 0.71 0.619434
Target:  5'- gUUCGcGGCGGCGGCCCGcgCUCGcGGCgCUc -3'
miRNA:   3'- -AAGC-UUGUCGCCGGGUa-GAGC-UCG-GA- -5'
11025 5' -57.7 NC_002794.1 + 189247 0.71 0.613385
Target:  5'- aUCaGACAGCGGCCCAgcgggaucaacaccuUCUCGcAGCa- -3'
miRNA:   3'- aAGcUUGUCGCCGGGU---------------AGAGC-UCGga -5'
11025 5' -57.7 NC_002794.1 + 182955 0.71 0.609355
Target:  5'- cUCGAgccgACGGCGGCCgGcuccucgUUCGAGCCg -3'
miRNA:   3'- aAGCU----UGUCGCCGGgUa------GAGCUCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.