miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11025 5' -57.7 NC_002794.1 + 282 0.68 0.776508
Target:  5'- --aGGACGGCGGCCCugg-CGcGCCg -3'
miRNA:   3'- aagCUUGUCGCCGGGuagaGCuCGGa -5'
11025 5' -57.7 NC_002794.1 + 10646 0.67 0.836442
Target:  5'- --gGAGCGGCGcgaGCCCGacgagcgUCUgGAGCCg -3'
miRNA:   3'- aagCUUGUCGC---CGGGU-------AGAgCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 13885 0.67 0.802584
Target:  5'- -cCGAGCGccgcccuGUGGUUCGUCUUGAGUCUg -3'
miRNA:   3'- aaGCUUGU-------CGCCGGGUAGAGCUCGGA- -5'
11025 5' -57.7 NC_002794.1 + 14492 0.71 0.619434
Target:  5'- gUUCGcGGCGGCGGCCCGcgCUCGcGGCgCUc -3'
miRNA:   3'- -AAGC-UUGUCGCCGGGUa-GAGC-UCG-GA- -5'
11025 5' -57.7 NC_002794.1 + 18290 0.66 0.860722
Target:  5'- cUUCGAACcgAGCcGCCC-UCUCGAggGCCc -3'
miRNA:   3'- -AAGCUUG--UCGcCGGGuAGAGCU--CGGa -5'
11025 5' -57.7 NC_002794.1 + 19964 0.7 0.669818
Target:  5'- cUUCGAGCuGCGGCCgCccUUCGGGCUg -3'
miRNA:   3'- -AAGCUUGuCGCCGG-GuaGAGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 21397 0.72 0.529874
Target:  5'- cUCGGACAccGcCGGCuCCAcgaUCUCGAGCCc -3'
miRNA:   3'- aAGCUUGU--C-GCCG-GGU---AGAGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 25536 0.7 0.669818
Target:  5'- cUCGAugAGcCGGCCaGUCUC-AGCCg -3'
miRNA:   3'- aAGCUugUC-GCCGGgUAGAGcUCGGa -5'
11025 5' -57.7 NC_002794.1 + 26648 0.67 0.803462
Target:  5'- -cCGGACGGCGGCCgG-CUCGucGGCg- -3'
miRNA:   3'- aaGCUUGUCGCCGGgUaGAGC--UCGga -5'
11025 5' -57.7 NC_002794.1 + 31892 0.66 0.853092
Target:  5'- cUCGAcCAGCGGCgCGUCgcugaUGAGCg- -3'
miRNA:   3'- aAGCUuGUCGCCGgGUAGa----GCUCGga -5'
11025 5' -57.7 NC_002794.1 + 32163 0.68 0.776508
Target:  5'- -cCGAGCGGUGGCCCGcCU--GGCCc -3'
miRNA:   3'- aaGCUUGUCGCCGGGUaGAgcUCGGa -5'
11025 5' -57.7 NC_002794.1 + 32266 0.66 0.882388
Target:  5'- cUCG-ACGGcCGGCCgAUCggCGAGCg- -3'
miRNA:   3'- aAGCuUGUC-GCCGGgUAGa-GCUCGga -5'
11025 5' -57.7 NC_002794.1 + 32828 0.66 0.876086
Target:  5'- gUCGGccucGCGGcCGGCUCAUCgguagcggcagcggcCGAGCCg -3'
miRNA:   3'- aAGCU----UGUC-GCCGGGUAGa--------------GCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 36995 0.66 0.853092
Target:  5'- gUCGGcgaGGCGGaCCCGguagagcggCUCGGGCCc -3'
miRNA:   3'- aAGCUug-UCGCC-GGGUa--------GAGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 37542 0.67 0.82823
Target:  5'- -gCGAACAGCcgccggaggGGCCacgaccgCGUCUCcGAGCCg -3'
miRNA:   3'- aaGCUUGUCG---------CCGG-------GUAGAG-CUCGGa -5'
11025 5' -57.7 NC_002794.1 + 37960 0.69 0.71945
Target:  5'- cUCGcuCGGCGGCUCGUgguaCGAGCCg -3'
miRNA:   3'- aAGCuuGUCGCCGGGUAga--GCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 40487 0.7 0.659768
Target:  5'- aUCGAACGGcCGGCgCucgccgCUCGAGUCa -3'
miRNA:   3'- aAGCUUGUC-GCCGgGua----GAGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 41254 0.68 0.757898
Target:  5'- -cCGAcgcCGGCGGCCCGUCgUCGcGCUc -3'
miRNA:   3'- aaGCUu--GUCGCCGGGUAG-AGCuCGGa -5'
11025 5' -57.7 NC_002794.1 + 44174 0.75 0.369929
Target:  5'- -gCGAGCGGCGGCUCGUCgacuccgggcgaagcCGGGCCg -3'
miRNA:   3'- aaGCUUGUCGCCGGGUAGa--------------GCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 44502 0.71 0.569273
Target:  5'- gUCucACGGCGGCCCAgacCGGGCCc -3'
miRNA:   3'- aAGcuUGUCGCCGGGUagaGCUCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.