miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11025 5' -57.7 NC_002794.1 + 46241 0.7 0.648689
Target:  5'- cUCGc-CGGCGGCUCGUCcgcuuccUCGGGCCg -3'
miRNA:   3'- aAGCuuGUCGCCGGGUAG-------AGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 50766 0.71 0.619434
Target:  5'- -cCGGGCGGCGGCgacggcgCGUCUCGGGCg- -3'
miRNA:   3'- aaGCUUGUCGCCGg------GUAGAGCUCGga -5'
11025 5' -57.7 NC_002794.1 + 53182 0.67 0.820691
Target:  5'- cUCG-GCAG-GGCCCAgC-CGAGCCa -3'
miRNA:   3'- aAGCuUGUCgCCGGGUaGaGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 53220 0.69 0.689819
Target:  5'- gUCGAGCGGCgaaacGGUCCGUCcUCG-GCCc -3'
miRNA:   3'- aAGCUUGUCG-----CCGGGUAG-AGCuCGGa -5'
11025 5' -57.7 NC_002794.1 + 53417 0.76 0.316262
Target:  5'- --aGAACAGCGGCCCGcUCUCGcucGCCc -3'
miRNA:   3'- aagCUUGUCGCCGGGU-AGAGCu--CGGa -5'
11025 5' -57.7 NC_002794.1 + 54247 0.67 0.837254
Target:  5'- -cCGAGCGcGCGGUCCAcggcgccgCgUCGGGCCa -3'
miRNA:   3'- aaGCUUGU-CGCCGGGUa-------G-AGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 55186 0.67 0.822378
Target:  5'- cUCGAgGCGGCGGCCCuaacaccggcgCggcggaggccggcggUCGAGCCg -3'
miRNA:   3'- aAGCU-UGUCGCCGGGua---------G---------------AGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 65818 0.72 0.529874
Target:  5'- uUUCGAuCAGCGccgaGCUCcUCUCGAGCCg -3'
miRNA:   3'- -AAGCUuGUCGC----CGGGuAGAGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 67728 0.66 0.882388
Target:  5'- cUCGGucccgGCGGCGGCCac-C-CGAGCCc -3'
miRNA:   3'- aAGCU-----UGUCGCCGGguaGaGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 70876 0.66 0.875375
Target:  5'- -gCGGcaGCGGCGGCUC--CUCGAGCg- -3'
miRNA:   3'- aaGCU--UGUCGCCGGGuaGAGCUCGga -5'
11025 5' -57.7 NC_002794.1 + 79689 0.69 0.729193
Target:  5'- cUCGAGCAGCucgGGCCgCcgCUCGuGuCCUa -3'
miRNA:   3'- aAGCUUGUCG---CCGG-GuaGAGCuC-GGA- -5'
11025 5' -57.7 NC_002794.1 + 81181 0.67 0.829059
Target:  5'- -cCGGACAGCGGCUgucUCUUGuacGGCCg -3'
miRNA:   3'- aaGCUUGUCGCCGGgu-AGAGC---UCGGa -5'
11025 5' -57.7 NC_002794.1 + 82450 0.7 0.679838
Target:  5'- cUCGGcACGGuCGGCCCGacCUCGAcGCCg -3'
miRNA:   3'- aAGCU-UGUC-GCCGGGUa-GAGCU-CGGa -5'
11025 5' -57.7 NC_002794.1 + 83181 0.67 0.829059
Target:  5'- gUCGAGC-GCGGCuucgCCAUCaacaacgcgcCGAGCCUg -3'
miRNA:   3'- aAGCUUGuCGCCG----GGUAGa---------GCUCGGA- -5'
11025 5' -57.7 NC_002794.1 + 86841 0.68 0.738855
Target:  5'- aUCGGGuCGGCGGCCCcgCcgggaUUGGGUCUg -3'
miRNA:   3'- aAGCUU-GUCGCCGGGuaG-----AGCUCGGA- -5'
11025 5' -57.7 NC_002794.1 + 89455 0.66 0.882388
Target:  5'- aUCGGACGacccGCGGCuCCGgggaCUCcGGCCUg -3'
miRNA:   3'- aAGCUUGU----CGCCG-GGUa---GAGcUCGGA- -5'
11025 5' -57.7 NC_002794.1 + 95239 0.67 0.829059
Target:  5'- gUUGGuucGCGGCCCcguuUgUCGAGCCUg -3'
miRNA:   3'- aAGCUuguCGCCGGGu---AgAGCUCGGA- -5'
11025 5' -57.7 NC_002794.1 + 101486 0.67 0.803462
Target:  5'- -cCGAAacgcCGGCGGCCgGUC-CGAGCg- -3'
miRNA:   3'- aaGCUU----GUCGCCGGgUAGaGCUCGga -5'
11025 5' -57.7 NC_002794.1 + 101655 0.67 0.829059
Target:  5'- -gCGGGCGGCGguuaGCCCGUC-CGAaacGCCg -3'
miRNA:   3'- aaGCUUGUCGC----CGGGUAGaGCU---CGGa -5'
11025 5' -57.7 NC_002794.1 + 104260 0.69 0.689819
Target:  5'- cUCGGGCAGCcgcucggccGGCaCCGugccgaacaggaUCUCGGGCCg -3'
miRNA:   3'- aAGCUUGUCG---------CCG-GGU------------AGAGCUCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.