miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11025 5' -57.7 NC_002794.1 + 189546 0.67 0.812156
Target:  5'- gUCGAuccaccacAUGGCGGUCCcgCUCGgucGGCCg -3'
miRNA:   3'- aAGCU--------UGUCGCCGGGuaGAGC---UCGGa -5'
11025 5' -57.7 NC_002794.1 + 189247 0.71 0.613385
Target:  5'- aUCaGACAGCGGCCCAgcgggaucaacaccuUCUCGcAGCa- -3'
miRNA:   3'- aAGcUUGUCGCCGGGU---------------AGAGC-UCGga -5'
11025 5' -57.7 NC_002794.1 + 189036 0.68 0.770975
Target:  5'- cUCGAccgccaGCGGCgGGCUgcgcgucgcguacggCGUCUCGGGCCg -3'
miRNA:   3'- aAGCU------UGUCG-CCGG---------------GUAGAGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 187676 0.68 0.742695
Target:  5'- aUCGGGCgaugcgggucgAGCGGCCCGUUggccgucuccgucaCGGGCCg -3'
miRNA:   3'- aAGCUUG-----------UCGCCGGGUAGa-------------GCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 187339 0.66 0.882388
Target:  5'- --gGAGCAGCaGCCCGUCguUCGcGGUCa -3'
miRNA:   3'- aagCUUGUCGcCGGGUAG--AGC-UCGGa -5'
11025 5' -57.7 NC_002794.1 + 183242 0.68 0.78563
Target:  5'- -cCGAcacGCGGCGGCCCGccaCUCGguacaguacAGCCa -3'
miRNA:   3'- aaGCU---UGUCGCCGGGUa--GAGC---------UCGGa -5'
11025 5' -57.7 NC_002794.1 + 183153 0.68 0.738855
Target:  5'- -gCGGACAcGCGGCCgGgcugCcCGAGCCg -3'
miRNA:   3'- aaGCUUGU-CGCCGGgUa---GaGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 182955 0.71 0.609355
Target:  5'- cUCGAgccgACGGCGGCCgGcuccucgUUCGAGCCg -3'
miRNA:   3'- aAGCU----UGUCGCCGGgUa------GAGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 180877 0.67 0.820691
Target:  5'- -gCGGAucCGGCGcGCCCgGUCUCG-GCCg -3'
miRNA:   3'- aaGCUU--GUCGC-CGGG-UAGAGCuCGGa -5'
11025 5' -57.7 NC_002794.1 + 180621 0.69 0.71945
Target:  5'- -aCGAcACGGCGGCCCAcccgcgCUccagacgaCGAGCCa -3'
miRNA:   3'- aaGCU-UGUCGCCGGGUa-----GA--------GCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 156498 0.67 0.803462
Target:  5'- -cCGGuuUAGCGGCCCGUUgaucgCGAGUCc -3'
miRNA:   3'- aaGCUu-GUCGCCGGGUAGa----GCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 150847 0.67 0.794617
Target:  5'- cUCcAGCGGCGGCCgCGUCUac-GCCUa -3'
miRNA:   3'- aAGcUUGUCGCCGG-GUAGAgcuCGGA- -5'
11025 5' -57.7 NC_002794.1 + 149747 0.67 0.803462
Target:  5'- gUgGAGCGGCGGgaCCgcuGUCUCG-GCCUg -3'
miRNA:   3'- aAgCUUGUCGCCg-GG---UAGAGCuCGGA- -5'
11025 5' -57.7 NC_002794.1 + 148373 0.67 0.820691
Target:  5'- aUCG-GCAGCgGGgCCAUCUgGAGCg- -3'
miRNA:   3'- aAGCuUGUCG-CCgGGUAGAgCUCGga -5'
11025 5' -57.7 NC_002794.1 + 147041 0.67 0.820691
Target:  5'- -aCGAAgccguCGGCGGCCgGUCUaaggacgGAGCCg -3'
miRNA:   3'- aaGCUU-----GUCGCCGGgUAGAg------CUCGGa -5'
11025 5' -57.7 NC_002794.1 + 143120 0.66 0.875375
Target:  5'- cUCG-GCcGUGGCgCAggUCUCGGGCCa -3'
miRNA:   3'- aAGCuUGuCGCCGgGU--AGAGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 135889 0.75 0.361219
Target:  5'- cUCGGACAGCGGaaCAgguccCUCGAGCCg -3'
miRNA:   3'- aAGCUUGUCGCCggGUa----GAGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 131874 0.69 0.729193
Target:  5'- cUUGGGCGccGCGGCCuCAUCUCG-GUCg -3'
miRNA:   3'- aAGCUUGU--CGCCGG-GUAGAGCuCGGa -5'
11025 5' -57.7 NC_002794.1 + 131565 0.7 0.669818
Target:  5'- gUCGGcGCGGC-GCCCGUCUUGAcgGCCUc -3'
miRNA:   3'- aAGCU-UGUCGcCGGGUAGAGCU--CGGA- -5'
11025 5' -57.7 NC_002794.1 + 131166 0.75 0.369132
Target:  5'- --aGcACGGC-GCCCGUCUCGAGCCg -3'
miRNA:   3'- aagCuUGUCGcCGGGUAGAGCUCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.