Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 11026 | 5' | -56.1 | NC_002794.1 | + | 38112 | 0.66 | 0.929651 |
|
Target: 5'- aGACgcGGGAGAGCcgcgccagcugGGGCgUGGaGUCGAGc -3' miRNA: 3'- -UUGa-CCCUCUCGa----------UCUG-ACC-CAGCUC- -5' |
|||||||
| 11026 | 5' | -56.1 | NC_002794.1 | + | 123685 | 0.68 | 0.85878 |
|
Target: 5'- gGGCUGGGAGcaGGCgcGACUGGcGggcgUGAGc -3' miRNA: 3'- -UUGACCCUC--UCGauCUGACC-Ca---GCUC- -5' |
|||||||
| 11026 | 5' | -56.1 | NC_002794.1 | + | 132144 | 0.68 | 0.834936 |
|
Target: 5'- cGCUGGGcccGGGGaucggGGACggucUGGGUCGAGu -3' miRNA: 3'- uUGACCC---UCUCga---UCUG----ACCCAGCUC- -5' |
|||||||
| 11026 | 5' | -56.1 | NC_002794.1 | + | 178058 | 0.69 | 0.809451 |
|
Target: 5'- aGACUGGaAGAGCgagGGAUccgGGuGUCGAGa -3' miRNA: 3'- -UUGACCcUCUCGa--UCUGa--CC-CAGCUC- -5' |
|||||||
| 11026 | 5' | -56.1 | NC_002794.1 | + | 116049 | 0.72 | 0.604232 |
|
Target: 5'- gAGCgcagGGGGGAGCgcGACUGGGgucgCGGa -3' miRNA: 3'- -UUGa---CCCUCUCGauCUGACCCa---GCUc -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home