miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11027 3' -63 NC_002794.1 + 116908 0.66 0.694169
Target:  5'- cGGCGGcCgGuCCGGcGUCGGCUccGGCg -3'
miRNA:   3'- -CCGCCcGaCuGGCCcCAGCCGA--UCGa -5'
11027 3' -63 NC_002794.1 + 149879 0.66 0.693224
Target:  5'- cGGgGGGUcugggucaucgUGACCcGGGaUCGGCUgugucugGGCUa -3'
miRNA:   3'- -CCgCCCG-----------ACUGGcCCC-AGCCGA-------UCGA- -5'
11027 3' -63 NC_002794.1 + 100822 0.66 0.684693
Target:  5'- -cCGGGC-GGCgGGGGcCGGCagccgGGCUu -3'
miRNA:   3'- ccGCCCGaCUGgCCCCaGCCGa----UCGA- -5'
11027 3' -63 NC_002794.1 + 87277 0.66 0.684693
Target:  5'- aGGcCGGGCgGGUgGGGGUgGGgaAGCg -3'
miRNA:   3'- -CC-GCCCGaCUGgCCCCAgCCgaUCGa -5'
11027 3' -63 NC_002794.1 + 126265 0.66 0.675178
Target:  5'- cGGC-GGCUGGCUGGcGGcgcUgGGCUuGCUg -3'
miRNA:   3'- -CCGcCCGACUGGCC-CC---AgCCGAuCGA- -5'
11027 3' -63 NC_002794.1 + 102677 0.66 0.675178
Target:  5'- cGUGGGC-GACCGGGuGUCGuacguGCUgacGGCc -3'
miRNA:   3'- cCGCCCGaCUGGCCC-CAGC-----CGA---UCGa -5'
11027 3' -63 NC_002794.1 + 126379 0.66 0.675178
Target:  5'- cGUGGGC--GCCGGGGccugcgCGGC-GGCg -3'
miRNA:   3'- cCGCCCGacUGGCCCCa-----GCCGaUCGa -5'
11027 3' -63 NC_002794.1 + 182314 0.66 0.656064
Target:  5'- -aCGGGCgGACgGGcGGUCgGGCgGGCg -3'
miRNA:   3'- ccGCCCGaCUGgCC-CCAG-CCGaUCGa -5'
11027 3' -63 NC_002794.1 + 156472 0.67 0.627282
Target:  5'- gGGCGGGg-GACgaCGGGG-CGGCUuuaccgguuuAGCg -3'
miRNA:   3'- -CCGCCCgaCUG--GCCCCaGCCGA----------UCGa -5'
11027 3' -63 NC_002794.1 + 147211 0.67 0.617686
Target:  5'- cGuCGGGCcggGGCCGGGGcgUUGGCgcgaugGGCc -3'
miRNA:   3'- cC-GCCCGa--CUGGCCCC--AGCCGa-----UCGa -5'
11027 3' -63 NC_002794.1 + 99572 0.67 0.617686
Target:  5'- cGCGGGCgagggggGugCGGaGGgcgCGGCggcGGCg -3'
miRNA:   3'- cCGCCCGa------CugGCC-CCa--GCCGa--UCGa -5'
11027 3' -63 NC_002794.1 + 182352 0.67 0.6081
Target:  5'- gGGCGGGCgggUGACCGGGcgcaCGGCcccccGGUc -3'
miRNA:   3'- -CCGCCCG---ACUGGCCCca--GCCGa----UCGa -5'
11027 3' -63 NC_002794.1 + 66856 0.67 0.6081
Target:  5'- cGGCGcGGCgaGGCCGcGGcGUgCGGCUgAGCc -3'
miRNA:   3'- -CCGC-CCGa-CUGGC-CC-CA-GCCGA-UCGa -5'
11027 3' -63 NC_002794.1 + 98926 0.67 0.598529
Target:  5'- aGCGGGCUGggcgcgGCCGGGaaggGGCUggGGCUc -3'
miRNA:   3'- cCGCCCGAC------UGGCCCcag-CCGA--UCGA- -5'
11027 3' -63 NC_002794.1 + 38439 0.67 0.579459
Target:  5'- cGGCGGGCcgGACUGaGGaGcCGGCgcGGCc -3'
miRNA:   3'- -CCGCCCGa-CUGGC-CC-CaGCCGa-UCGa -5'
11027 3' -63 NC_002794.1 + 137645 0.67 0.579459
Target:  5'- uGGCGGGC--GCCGGGccucCGGCgccGCUg -3'
miRNA:   3'- -CCGCCCGacUGGCCCca--GCCGau-CGA- -5'
11027 3' -63 NC_002794.1 + 119103 0.68 0.569971
Target:  5'- uGGUGGGCguccaGAUCGGGGacgcagaaGGcCUGGCa -3'
miRNA:   3'- -CCGCCCGa----CUGGCCCCag------CC-GAUCGa -5'
11027 3' -63 NC_002794.1 + 142214 0.68 0.569971
Target:  5'- cGGCGGcaGCggcgGugCGGGGagCGGCggaGGCg -3'
miRNA:   3'- -CCGCC--CGa---CugGCCCCa-GCCGa--UCGa -5'
11027 3' -63 NC_002794.1 + 107225 0.68 0.569971
Target:  5'- gGGCGGcGCgcGACgGGGG-CGGCgucGCg -3'
miRNA:   3'- -CCGCC-CGa-CUGgCCCCaGCCGau-CGa -5'
11027 3' -63 NC_002794.1 + 125737 0.68 0.569971
Target:  5'- aGGCGgaGGCgGGCCGcGGGacggCGGCcGGCg -3'
miRNA:   3'- -CCGC--CCGaCUGGC-CCCa---GCCGaUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.