miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11027 3' -63 NC_002794.1 + 178264 0.83 0.0666
Target:  5'- aGCGGGCUGACCggagacGGGGUCGGUcgAGCg -3'
miRNA:   3'- cCGCCCGACUGG------CCCCAGCCGa-UCGa -5'
11027 3' -63 NC_002794.1 + 21521 0.81 0.087745
Target:  5'- aGGaCGGGCgGAUCGGGaUCGGCUAGCUc -3'
miRNA:   3'- -CC-GCCCGaCUGGCCCcAGCCGAUCGA- -5'
11027 3' -63 NC_002794.1 + 118250 0.8 0.101583
Target:  5'- cGGCGGGCUGgaggucgGCCGGGG-CGGC-GGCg -3'
miRNA:   3'- -CCGCCCGAC-------UGGCCCCaGCCGaUCGa -5'
11027 3' -63 NC_002794.1 + 121000 0.78 0.150455
Target:  5'- cGGCGGGCcaUGGCCGaGGGUCGGCc---- -3'
miRNA:   3'- -CCGCCCG--ACUGGC-CCCAGCCGaucga -5'
11027 3' -63 NC_002794.1 + 94035 0.73 0.307256
Target:  5'- cGGCGGGCccgagagcggcggcgGugCGGGGgCGGCggggGGCg -3'
miRNA:   3'- -CCGCCCGa--------------CugGCCCCaGCCGa---UCGa -5'
11027 3' -63 NC_002794.1 + 95796 0.72 0.355652
Target:  5'- aGGCGcGGCggagGaACCGGGGgagCGGC-GGCg -3'
miRNA:   3'- -CCGC-CCGa---C-UGGCCCCa--GCCGaUCGa -5'
11027 3' -63 NC_002794.1 + 95839 0.72 0.33397
Target:  5'- cGGCGgcGGC-GGCCGGGGaggCGGCgGGCg -3'
miRNA:   3'- -CCGC--CCGaCUGGCCCCa--GCCGaUCGa -5'
11027 3' -63 NC_002794.1 + 94281 0.71 0.386068
Target:  5'- cGGCGcGGCccGAgCGGGGggCGGCUcgGGCg -3'
miRNA:   3'- -CCGC-CCGa-CUgGCCCCa-GCCGA--UCGa -5'
11027 3' -63 NC_002794.1 + 90945 0.71 0.401907
Target:  5'- gGGCGGGCUGugCGccgaggcccGGGcccgcuUCGGCgUGGCc -3'
miRNA:   3'- -CCGCCCGACugGC---------CCC------AGCCG-AUCGa -5'
11027 3' -63 NC_002794.1 + 92305 0.71 0.378305
Target:  5'- aGGCgGGGCUGGgCGcGGG-CGGCgggGGCc -3'
miRNA:   3'- -CCG-CCCGACUgGC-CCCaGCCGa--UCGa -5'
11027 3' -63 NC_002794.1 + 101031 0.71 0.363095
Target:  5'- cGCGGGCcGGgCGcGGGUCGGCc-GCUa -3'
miRNA:   3'- cCGCCCGaCUgGC-CCCAGCCGauCGA- -5'
11027 3' -63 NC_002794.1 + 55315 0.71 0.383728
Target:  5'- cGGCGGGCgcgGGcggcuuccgaggacCCGGGGUCGcGCccgaGGCg -3'
miRNA:   3'- -CCGCCCGa--CU--------------GGCCCCAGC-CGa---UCGa -5'
11027 3' -63 NC_002794.1 + 63996 0.7 0.46045
Target:  5'- aGCGGGCUccGuCUGGGuccugCGGCUGGCg -3'
miRNA:   3'- cCGCCCGA--CuGGCCCca---GCCGAUCGa -5'
11027 3' -63 NC_002794.1 + 144757 0.7 0.450948
Target:  5'- cGGUGGuucugggaacgcaGCUGGCCGGcGUCGccGCUGGCUu -3'
miRNA:   3'- -CCGCC-------------CGACUGGCCcCAGC--CGAUCGA- -5'
11027 3' -63 NC_002794.1 + 98976 0.7 0.426424
Target:  5'- cGGCGGcGCcgUGGCCucGGuGGUCGGC-GGCUu -3'
miRNA:   3'- -CCGCC-CG--ACUGG--CC-CCAGCCGaUCGA- -5'
11027 3' -63 NC_002794.1 + 156430 0.7 0.459582
Target:  5'- cGGCGGGUgagaGACCGGucgcgccgaaggcGGUUGGUUAGg- -3'
miRNA:   3'- -CCGCCCGa---CUGGCC-------------CCAGCCGAUCga -5'
11027 3' -63 NC_002794.1 + 115845 0.7 0.46045
Target:  5'- cGGCGGGCUcgGGCCugggacgcgcgaGGGGUCcggGGCguccggGGCg -3'
miRNA:   3'- -CCGCCCGA--CUGG------------CCCCAG---CCGa-----UCGa -5'
11027 3' -63 NC_002794.1 + 11534 0.69 0.46918
Target:  5'- uGCGGGC-GACCGaGGaccgCGGCUGGUc -3'
miRNA:   3'- cCGCCCGaCUGGCcCCa---GCCGAUCGa -5'
11027 3' -63 NC_002794.1 + 122997 0.69 0.495862
Target:  5'- uGCGGGCcGugCugacGGGcCGGCUGGCc -3'
miRNA:   3'- cCGCCCGaCugGc---CCCaGCCGAUCGa -5'
11027 3' -63 NC_002794.1 + 32583 0.69 0.48689
Target:  5'- cGGCGGuGCcggGGCCGGGGcCGG--GGCc -3'
miRNA:   3'- -CCGCC-CGa--CUGGCCCCaGCCgaUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.