Results 41 - 48 of 48 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 11027 | 3' | -63 | NC_002794.1 | + | 182314 | 0.66 | 0.656064 |
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Target: 5'- -aCGGGCgGACgGGcGGUCgGGCgGGCg -3' miRNA: 3'- ccGCCCGaCUGgCC-CCAG-CCGaUCGa -5' |
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| 11027 | 3' | -63 | NC_002794.1 | + | 126379 | 0.66 | 0.675178 |
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Target: 5'- cGUGGGC--GCCGGGGccugcgCGGC-GGCg -3' miRNA: 3'- cCGCCCGacUGGCCCCa-----GCCGaUCGa -5' |
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| 11027 | 3' | -63 | NC_002794.1 | + | 102677 | 0.66 | 0.675178 |
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Target: 5'- cGUGGGC-GACCGGGuGUCGuacguGCUgacGGCc -3' miRNA: 3'- cCGCCCGaCUGGCCC-CAGC-----CGA---UCGa -5' |
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| 11027 | 3' | -63 | NC_002794.1 | + | 126265 | 0.66 | 0.675178 |
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Target: 5'- cGGC-GGCUGGCUGGcGGcgcUgGGCUuGCUg -3' miRNA: 3'- -CCGcCCGACUGGCC-CC---AgCCGAuCGA- -5' |
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| 11027 | 3' | -63 | NC_002794.1 | + | 87277 | 0.66 | 0.684693 |
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Target: 5'- aGGcCGGGCgGGUgGGGGUgGGgaAGCg -3' miRNA: 3'- -CC-GCCCGaCUGgCCCCAgCCgaUCGa -5' |
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| 11027 | 3' | -63 | NC_002794.1 | + | 100822 | 0.66 | 0.684693 |
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Target: 5'- -cCGGGC-GGCgGGGGcCGGCagccgGGCUu -3' miRNA: 3'- ccGCCCGaCUGgCCCCaGCCGa----UCGA- -5' |
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| 11027 | 3' | -63 | NC_002794.1 | + | 149879 | 0.66 | 0.693224 |
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Target: 5'- cGGgGGGUcugggucaucgUGACCcGGGaUCGGCUgugucugGGCUa -3' miRNA: 3'- -CCgCCCG-----------ACUGGcCCC-AGCCGA-------UCGA- -5' |
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| 11027 | 3' | -63 | NC_002794.1 | + | 116908 | 0.66 | 0.694169 |
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Target: 5'- cGGCGGcCgGuCCGGcGUCGGCUccGGCg -3' miRNA: 3'- -CCGCCcGaCuGGCCcCAGCCGA--UCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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