miRNA display CGI


Results 21 - 40 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11027 3' -63 NC_002794.1 + 141399 0.68 0.569024
Target:  5'- cGGgGGGCUcggcgacgacgauGACCucGGGGgCGGCgggGGCg -3'
miRNA:   3'- -CCgCCCGA-------------CUGG--CCCCaGCCGa--UCGa -5'
11027 3' -63 NC_002794.1 + 112347 0.68 0.560521
Target:  5'- cGGCGGcGCcGGCggCGGGG-CGGggAGCUg -3'
miRNA:   3'- -CCGCC-CGaCUG--GCCCCaGCCgaUCGA- -5'
11027 3' -63 NC_002794.1 + 186021 0.68 0.551115
Target:  5'- gGGCccGGGCccgGACCcGGGcccCGGCUGGCc -3'
miRNA:   3'- -CCG--CCCGa--CUGGcCCCa--GCCGAUCGa -5'
11027 3' -63 NC_002794.1 + 101646 0.68 0.551115
Target:  5'- cGUGGGCgGGCgGGcGG-CGGUUAGCc -3'
miRNA:   3'- cCGCCCGaCUGgCC-CCaGCCGAUCGa -5'
11027 3' -63 NC_002794.1 + 179658 0.68 0.541758
Target:  5'- aGGCGGGCUcGCCGGacGGcacccgCGGC-GGCg -3'
miRNA:   3'- -CCGCCCGAcUGGCC--CCa-----GCCGaUCGa -5'
11027 3' -63 NC_002794.1 + 32640 0.68 0.532454
Target:  5'- aGGgGGGCgacGACCGGGGcgaCGGCg---- -3'
miRNA:   3'- -CCgCCCGa--CUGGCCCCa--GCCGaucga -5'
11027 3' -63 NC_002794.1 + 121180 0.68 0.520447
Target:  5'- aGCGGGCUccgcacgacgauccGAUCGGGGUCGaCUucgggGGCg -3'
miRNA:   3'- cCGCCCGA--------------CUGGCCCCAGCcGA-----UCGa -5'
11027 3' -63 NC_002794.1 + 122997 0.69 0.495862
Target:  5'- uGCGGGCcGugCugacGGGcCGGCUGGCc -3'
miRNA:   3'- cCGCCCGaCugGc---CCCaGCCGAUCGa -5'
11027 3' -63 NC_002794.1 + 32583 0.69 0.48689
Target:  5'- cGGCGGuGCcggGGCCGGGGcCGG--GGCc -3'
miRNA:   3'- -CCGCC-CGa--CUGGCCCCaGCCgaUCGa -5'
11027 3' -63 NC_002794.1 + 86929 0.69 0.48689
Target:  5'- uGGCGGGCaGGCgGGGcGggaucCGGCgAGCg -3'
miRNA:   3'- -CCGCCCGaCUGgCCC-Ca----GCCGaUCGa -5'
11027 3' -63 NC_002794.1 + 11534 0.69 0.46918
Target:  5'- uGCGGGC-GACCGaGGaccgCGGCUGGUc -3'
miRNA:   3'- cCGCCCGaCUGGCcCCa---GCCGAUCGa -5'
11027 3' -63 NC_002794.1 + 63996 0.7 0.46045
Target:  5'- aGCGGGCUccGuCUGGGuccugCGGCUGGCg -3'
miRNA:   3'- cCGCCCGA--CuGGCCCca---GCCGAUCGa -5'
11027 3' -63 NC_002794.1 + 115845 0.7 0.46045
Target:  5'- cGGCGGGCUcgGGCCugggacgcgcgaGGGGUCcggGGCguccggGGCg -3'
miRNA:   3'- -CCGCCCGA--CUGG------------CCCCAG---CCGa-----UCGa -5'
11027 3' -63 NC_002794.1 + 156430 0.7 0.459582
Target:  5'- cGGCGGGUgagaGACCGGucgcgccgaaggcGGUUGGUUAGg- -3'
miRNA:   3'- -CCGCCCGa---CUGGCC-------------CCAGCCGAUCga -5'
11027 3' -63 NC_002794.1 + 144757 0.7 0.450948
Target:  5'- cGGUGGuucugggaacgcaGCUGGCCGGcGUCGccGCUGGCUu -3'
miRNA:   3'- -CCGCC-------------CGACUGGCCcCAGC--CGAUCGA- -5'
11027 3' -63 NC_002794.1 + 98976 0.7 0.426424
Target:  5'- cGGCGGcGCcgUGGCCucGGuGGUCGGC-GGCUu -3'
miRNA:   3'- -CCGCC-CG--ACUGG--CC-CCAGCCGaUCGA- -5'
11027 3' -63 NC_002794.1 + 90945 0.71 0.401907
Target:  5'- gGGCGGGCUGugCGccgaggcccGGGcccgcuUCGGCgUGGCc -3'
miRNA:   3'- -CCGCCCGACugGC---------CCC------AGCCG-AUCGa -5'
11027 3' -63 NC_002794.1 + 94281 0.71 0.386068
Target:  5'- cGGCGcGGCccGAgCGGGGggCGGCUcgGGCg -3'
miRNA:   3'- -CCGC-CCGa-CUgGCCCCa-GCCGA--UCGa -5'
11027 3' -63 NC_002794.1 + 55315 0.71 0.383728
Target:  5'- cGGCGGGCgcgGGcggcuuccgaggacCCGGGGUCGcGCccgaGGCg -3'
miRNA:   3'- -CCGCCCGa--CU--------------GGCCCCAGC-CGa---UCGa -5'
11027 3' -63 NC_002794.1 + 92305 0.71 0.378305
Target:  5'- aGGCgGGGCUGGgCGcGGG-CGGCgggGGCc -3'
miRNA:   3'- -CCG-CCCGACUgGC-CCCaGCCGa--UCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.