Results 41 - 48 of 48 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 11027 | 3' | -63 | NC_002794.1 | + | 101031 | 0.71 | 0.363095 |
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Target: 5'- cGCGGGCcGGgCGcGGGUCGGCc-GCUa -3' miRNA: 3'- cCGCCCGaCUgGC-CCCAGCCGauCGA- -5' |
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| 11027 | 3' | -63 | NC_002794.1 | + | 95796 | 0.72 | 0.355652 |
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Target: 5'- aGGCGcGGCggagGaACCGGGGgagCGGC-GGCg -3' miRNA: 3'- -CCGC-CCGa---C-UGGCCCCa--GCCGaUCGa -5' |
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| 11027 | 3' | -63 | NC_002794.1 | + | 95839 | 0.72 | 0.33397 |
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Target: 5'- cGGCGgcGGC-GGCCGGGGaggCGGCgGGCg -3' miRNA: 3'- -CCGC--CCGaCUGGCCCCa--GCCGaUCGa -5' |
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| 11027 | 3' | -63 | NC_002794.1 | + | 94035 | 0.73 | 0.307256 |
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Target: 5'- cGGCGGGCccgagagcggcggcgGugCGGGGgCGGCggggGGCg -3' miRNA: 3'- -CCGCCCGa--------------CugGCCCCaGCCGa---UCGa -5' |
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| 11027 | 3' | -63 | NC_002794.1 | + | 121000 | 0.78 | 0.150455 |
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Target: 5'- cGGCGGGCcaUGGCCGaGGGUCGGCc---- -3' miRNA: 3'- -CCGCCCG--ACUGGC-CCCAGCCGaucga -5' |
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| 11027 | 3' | -63 | NC_002794.1 | + | 118250 | 0.8 | 0.101583 |
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Target: 5'- cGGCGGGCUGgaggucgGCCGGGG-CGGC-GGCg -3' miRNA: 3'- -CCGCCCGAC-------UGGCCCCaGCCGaUCGa -5' |
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| 11027 | 3' | -63 | NC_002794.1 | + | 21521 | 0.81 | 0.087745 |
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Target: 5'- aGGaCGGGCgGAUCGGGaUCGGCUAGCUc -3' miRNA: 3'- -CC-GCCCGaCUGGCCCcAGCCGAUCGA- -5' |
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| 11027 | 3' | -63 | NC_002794.1 | + | 178264 | 0.83 | 0.0666 |
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Target: 5'- aGCGGGCUGACCggagacGGGGUCGGUcgAGCg -3' miRNA: 3'- cCGCCCGACUGG------CCCCAGCCGa-UCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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