miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11027 3' -63 NC_002794.1 + 101031 0.71 0.363095
Target:  5'- cGCGGGCcGGgCGcGGGUCGGCc-GCUa -3'
miRNA:   3'- cCGCCCGaCUgGC-CCCAGCCGauCGA- -5'
11027 3' -63 NC_002794.1 + 101646 0.68 0.551115
Target:  5'- cGUGGGCgGGCgGGcGG-CGGUUAGCc -3'
miRNA:   3'- cCGCCCGaCUGgCC-CCaGCCGAUCGa -5'
11027 3' -63 NC_002794.1 + 102677 0.66 0.675178
Target:  5'- cGUGGGC-GACCGGGuGUCGuacguGCUgacGGCc -3'
miRNA:   3'- cCGCCCGaCUGGCCC-CAGC-----CGA---UCGa -5'
11027 3' -63 NC_002794.1 + 107225 0.68 0.569971
Target:  5'- gGGCGGcGCgcGACgGGGG-CGGCgucGCg -3'
miRNA:   3'- -CCGCC-CGa-CUGgCCCCaGCCGau-CGa -5'
11027 3' -63 NC_002794.1 + 112347 0.68 0.560521
Target:  5'- cGGCGGcGCcGGCggCGGGG-CGGggAGCUg -3'
miRNA:   3'- -CCGCC-CGaCUG--GCCCCaGCCgaUCGA- -5'
11027 3' -63 NC_002794.1 + 115845 0.7 0.46045
Target:  5'- cGGCGGGCUcgGGCCugggacgcgcgaGGGGUCcggGGCguccggGGCg -3'
miRNA:   3'- -CCGCCCGA--CUGG------------CCCCAG---CCGa-----UCGa -5'
11027 3' -63 NC_002794.1 + 116908 0.66 0.694169
Target:  5'- cGGCGGcCgGuCCGGcGUCGGCUccGGCg -3'
miRNA:   3'- -CCGCCcGaCuGGCCcCAGCCGA--UCGa -5'
11027 3' -63 NC_002794.1 + 118250 0.8 0.101583
Target:  5'- cGGCGGGCUGgaggucgGCCGGGG-CGGC-GGCg -3'
miRNA:   3'- -CCGCCCGAC-------UGGCCCCaGCCGaUCGa -5'
11027 3' -63 NC_002794.1 + 119103 0.68 0.569971
Target:  5'- uGGUGGGCguccaGAUCGGGGacgcagaaGGcCUGGCa -3'
miRNA:   3'- -CCGCCCGa----CUGGCCCCag------CC-GAUCGa -5'
11027 3' -63 NC_002794.1 + 121000 0.78 0.150455
Target:  5'- cGGCGGGCcaUGGCCGaGGGUCGGCc---- -3'
miRNA:   3'- -CCGCCCG--ACUGGC-CCCAGCCGaucga -5'
11027 3' -63 NC_002794.1 + 121180 0.68 0.520447
Target:  5'- aGCGGGCUccgcacgacgauccGAUCGGGGUCGaCUucgggGGCg -3'
miRNA:   3'- cCGCCCGA--------------CUGGCCCCAGCcGA-----UCGa -5'
11027 3' -63 NC_002794.1 + 122997 0.69 0.495862
Target:  5'- uGCGGGCcGugCugacGGGcCGGCUGGCc -3'
miRNA:   3'- cCGCCCGaCugGc---CCCaGCCGAUCGa -5'
11027 3' -63 NC_002794.1 + 125737 0.68 0.569971
Target:  5'- aGGCGgaGGCgGGCCGcGGGacggCGGCcGGCg -3'
miRNA:   3'- -CCGC--CCGaCUGGC-CCCa---GCCGaUCGa -5'
11027 3' -63 NC_002794.1 + 126265 0.66 0.675178
Target:  5'- cGGC-GGCUGGCUGGcGGcgcUgGGCUuGCUg -3'
miRNA:   3'- -CCGcCCGACUGGCC-CC---AgCCGAuCGA- -5'
11027 3' -63 NC_002794.1 + 126379 0.66 0.675178
Target:  5'- cGUGGGC--GCCGGGGccugcgCGGC-GGCg -3'
miRNA:   3'- cCGCCCGacUGGCCCCa-----GCCGaUCGa -5'
11027 3' -63 NC_002794.1 + 137645 0.67 0.579459
Target:  5'- uGGCGGGC--GCCGGGccucCGGCgccGCUg -3'
miRNA:   3'- -CCGCCCGacUGGCCCca--GCCGau-CGA- -5'
11027 3' -63 NC_002794.1 + 141399 0.68 0.569024
Target:  5'- cGGgGGGCUcggcgacgacgauGACCucGGGGgCGGCgggGGCg -3'
miRNA:   3'- -CCgCCCGA-------------CUGG--CCCCaGCCGa--UCGa -5'
11027 3' -63 NC_002794.1 + 142214 0.68 0.569971
Target:  5'- cGGCGGcaGCggcgGugCGGGGagCGGCggaGGCg -3'
miRNA:   3'- -CCGCC--CGa---CugGCCCCa-GCCGa--UCGa -5'
11027 3' -63 NC_002794.1 + 144757 0.7 0.450948
Target:  5'- cGGUGGuucugggaacgcaGCUGGCCGGcGUCGccGCUGGCUu -3'
miRNA:   3'- -CCGCC-------------CGACUGGCCcCAGC--CGAUCGA- -5'
11027 3' -63 NC_002794.1 + 147211 0.67 0.617686
Target:  5'- cGuCGGGCcggGGCCGGGGcgUUGGCgcgaugGGCc -3'
miRNA:   3'- cC-GCCCGa--CUGGCCCC--AGCCGa-----UCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.