Results 41 - 48 of 48 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 11027 | 3' | -63 | NC_002794.1 | + | 149879 | 0.66 | 0.693224 |
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Target: 5'- cGGgGGGUcugggucaucgUGACCcGGGaUCGGCUgugucugGGCUa -3' miRNA: 3'- -CCgCCCG-----------ACUGGcCCC-AGCCGA-------UCGA- -5' |
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| 11027 | 3' | -63 | NC_002794.1 | + | 156430 | 0.7 | 0.459582 |
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Target: 5'- cGGCGGGUgagaGACCGGucgcgccgaaggcGGUUGGUUAGg- -3' miRNA: 3'- -CCGCCCGa---CUGGCC-------------CCAGCCGAUCga -5' |
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| 11027 | 3' | -63 | NC_002794.1 | + | 156472 | 0.67 | 0.627282 |
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Target: 5'- gGGCGGGg-GACgaCGGGG-CGGCUuuaccgguuuAGCg -3' miRNA: 3'- -CCGCCCgaCUG--GCCCCaGCCGA----------UCGa -5' |
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| 11027 | 3' | -63 | NC_002794.1 | + | 178264 | 0.83 | 0.0666 |
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Target: 5'- aGCGGGCUGACCggagacGGGGUCGGUcgAGCg -3' miRNA: 3'- cCGCCCGACUGG------CCCCAGCCGa-UCGa -5' |
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| 11027 | 3' | -63 | NC_002794.1 | + | 179658 | 0.68 | 0.541758 |
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Target: 5'- aGGCGGGCUcGCCGGacGGcacccgCGGC-GGCg -3' miRNA: 3'- -CCGCCCGAcUGGCC--CCa-----GCCGaUCGa -5' |
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| 11027 | 3' | -63 | NC_002794.1 | + | 182314 | 0.66 | 0.656064 |
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Target: 5'- -aCGGGCgGACgGGcGGUCgGGCgGGCg -3' miRNA: 3'- ccGCCCGaCUGgCC-CCAG-CCGaUCGa -5' |
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| 11027 | 3' | -63 | NC_002794.1 | + | 182352 | 0.67 | 0.6081 |
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Target: 5'- gGGCGGGCgggUGACCGGGcgcaCGGCcccccGGUc -3' miRNA: 3'- -CCGCCCG---ACUGGCCCca--GCCGa----UCGa -5' |
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| 11027 | 3' | -63 | NC_002794.1 | + | 186021 | 0.68 | 0.551115 |
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Target: 5'- gGGCccGGGCccgGACCcGGGcccCGGCUGGCc -3' miRNA: 3'- -CCG--CCCGa--CUGGcCCCa--GCCGAUCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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