Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11027 | 3' | -63 | NC_002794.1 | + | 186021 | 0.68 | 0.551115 |
Target: 5'- gGGCccGGGCccgGACCcGGGcccCGGCUGGCc -3' miRNA: 3'- -CCG--CCCGa--CUGGcCCCa--GCCGAUCGa -5' |
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11027 | 3' | -63 | NC_002794.1 | + | 182352 | 0.67 | 0.6081 |
Target: 5'- gGGCGGGCgggUGACCGGGcgcaCGGCcccccGGUc -3' miRNA: 3'- -CCGCCCG---ACUGGCCCca--GCCGa----UCGa -5' |
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11027 | 3' | -63 | NC_002794.1 | + | 182314 | 0.66 | 0.656064 |
Target: 5'- -aCGGGCgGACgGGcGGUCgGGCgGGCg -3' miRNA: 3'- ccGCCCGaCUGgCC-CCAG-CCGaUCGa -5' |
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11027 | 3' | -63 | NC_002794.1 | + | 179658 | 0.68 | 0.541758 |
Target: 5'- aGGCGGGCUcGCCGGacGGcacccgCGGC-GGCg -3' miRNA: 3'- -CCGCCCGAcUGGCC--CCa-----GCCGaUCGa -5' |
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11027 | 3' | -63 | NC_002794.1 | + | 178264 | 0.83 | 0.0666 |
Target: 5'- aGCGGGCUGACCggagacGGGGUCGGUcgAGCg -3' miRNA: 3'- cCGCCCGACUGG------CCCCAGCCGa-UCGa -5' |
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11027 | 3' | -63 | NC_002794.1 | + | 156472 | 0.67 | 0.627282 |
Target: 5'- gGGCGGGg-GACgaCGGGG-CGGCUuuaccgguuuAGCg -3' miRNA: 3'- -CCGCCCgaCUG--GCCCCaGCCGA----------UCGa -5' |
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11027 | 3' | -63 | NC_002794.1 | + | 156430 | 0.7 | 0.459582 |
Target: 5'- cGGCGGGUgagaGACCGGucgcgccgaaggcGGUUGGUUAGg- -3' miRNA: 3'- -CCGCCCGa---CUGGCC-------------CCAGCCGAUCga -5' |
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11027 | 3' | -63 | NC_002794.1 | + | 149879 | 0.66 | 0.693224 |
Target: 5'- cGGgGGGUcugggucaucgUGACCcGGGaUCGGCUgugucugGGCUa -3' miRNA: 3'- -CCgCCCG-----------ACUGGcCCC-AGCCGA-------UCGA- -5' |
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11027 | 3' | -63 | NC_002794.1 | + | 147211 | 0.67 | 0.617686 |
Target: 5'- cGuCGGGCcggGGCCGGGGcgUUGGCgcgaugGGCc -3' miRNA: 3'- cC-GCCCGa--CUGGCCCC--AGCCGa-----UCGa -5' |
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11027 | 3' | -63 | NC_002794.1 | + | 144757 | 0.7 | 0.450948 |
Target: 5'- cGGUGGuucugggaacgcaGCUGGCCGGcGUCGccGCUGGCUu -3' miRNA: 3'- -CCGCC-------------CGACUGGCCcCAGC--CGAUCGA- -5' |
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11027 | 3' | -63 | NC_002794.1 | + | 142214 | 0.68 | 0.569971 |
Target: 5'- cGGCGGcaGCggcgGugCGGGGagCGGCggaGGCg -3' miRNA: 3'- -CCGCC--CGa---CugGCCCCa-GCCGa--UCGa -5' |
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11027 | 3' | -63 | NC_002794.1 | + | 141399 | 0.68 | 0.569024 |
Target: 5'- cGGgGGGCUcggcgacgacgauGACCucGGGGgCGGCgggGGCg -3' miRNA: 3'- -CCgCCCGA-------------CUGG--CCCCaGCCGa--UCGa -5' |
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11027 | 3' | -63 | NC_002794.1 | + | 137645 | 0.67 | 0.579459 |
Target: 5'- uGGCGGGC--GCCGGGccucCGGCgccGCUg -3' miRNA: 3'- -CCGCCCGacUGGCCCca--GCCGau-CGA- -5' |
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11027 | 3' | -63 | NC_002794.1 | + | 126379 | 0.66 | 0.675178 |
Target: 5'- cGUGGGC--GCCGGGGccugcgCGGC-GGCg -3' miRNA: 3'- cCGCCCGacUGGCCCCa-----GCCGaUCGa -5' |
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11027 | 3' | -63 | NC_002794.1 | + | 126265 | 0.66 | 0.675178 |
Target: 5'- cGGC-GGCUGGCUGGcGGcgcUgGGCUuGCUg -3' miRNA: 3'- -CCGcCCGACUGGCC-CC---AgCCGAuCGA- -5' |
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11027 | 3' | -63 | NC_002794.1 | + | 125737 | 0.68 | 0.569971 |
Target: 5'- aGGCGgaGGCgGGCCGcGGGacggCGGCcGGCg -3' miRNA: 3'- -CCGC--CCGaCUGGC-CCCa---GCCGaUCGa -5' |
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11027 | 3' | -63 | NC_002794.1 | + | 122997 | 0.69 | 0.495862 |
Target: 5'- uGCGGGCcGugCugacGGGcCGGCUGGCc -3' miRNA: 3'- cCGCCCGaCugGc---CCCaGCCGAUCGa -5' |
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11027 | 3' | -63 | NC_002794.1 | + | 121180 | 0.68 | 0.520447 |
Target: 5'- aGCGGGCUccgcacgacgauccGAUCGGGGUCGaCUucgggGGCg -3' miRNA: 3'- cCGCCCGA--------------CUGGCCCCAGCcGA-----UCGa -5' |
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11027 | 3' | -63 | NC_002794.1 | + | 121000 | 0.78 | 0.150455 |
Target: 5'- cGGCGGGCcaUGGCCGaGGGUCGGCc---- -3' miRNA: 3'- -CCGCCCG--ACUGGC-CCCAGCCGaucga -5' |
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11027 | 3' | -63 | NC_002794.1 | + | 119103 | 0.68 | 0.569971 |
Target: 5'- uGGUGGGCguccaGAUCGGGGacgcagaaGGcCUGGCa -3' miRNA: 3'- -CCGCCCGa----CUGGCCCCag------CC-GAUCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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