miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11027 3' -63 NC_002794.1 + 118250 0.8 0.101583
Target:  5'- cGGCGGGCUGgaggucgGCCGGGG-CGGC-GGCg -3'
miRNA:   3'- -CCGCCCGAC-------UGGCCCCaGCCGaUCGa -5'
11027 3' -63 NC_002794.1 + 116908 0.66 0.694169
Target:  5'- cGGCGGcCgGuCCGGcGUCGGCUccGGCg -3'
miRNA:   3'- -CCGCCcGaCuGGCCcCAGCCGA--UCGa -5'
11027 3' -63 NC_002794.1 + 115845 0.7 0.46045
Target:  5'- cGGCGGGCUcgGGCCugggacgcgcgaGGGGUCcggGGCguccggGGCg -3'
miRNA:   3'- -CCGCCCGA--CUGG------------CCCCAG---CCGa-----UCGa -5'
11027 3' -63 NC_002794.1 + 112347 0.68 0.560521
Target:  5'- cGGCGGcGCcGGCggCGGGG-CGGggAGCUg -3'
miRNA:   3'- -CCGCC-CGaCUG--GCCCCaGCCgaUCGA- -5'
11027 3' -63 NC_002794.1 + 107225 0.68 0.569971
Target:  5'- gGGCGGcGCgcGACgGGGG-CGGCgucGCg -3'
miRNA:   3'- -CCGCC-CGa-CUGgCCCCaGCCGau-CGa -5'
11027 3' -63 NC_002794.1 + 102677 0.66 0.675178
Target:  5'- cGUGGGC-GACCGGGuGUCGuacguGCUgacGGCc -3'
miRNA:   3'- cCGCCCGaCUGGCCC-CAGC-----CGA---UCGa -5'
11027 3' -63 NC_002794.1 + 101646 0.68 0.551115
Target:  5'- cGUGGGCgGGCgGGcGG-CGGUUAGCc -3'
miRNA:   3'- cCGCCCGaCUGgCC-CCaGCCGAUCGa -5'
11027 3' -63 NC_002794.1 + 101031 0.71 0.363095
Target:  5'- cGCGGGCcGGgCGcGGGUCGGCc-GCUa -3'
miRNA:   3'- cCGCCCGaCUgGC-CCCAGCCGauCGA- -5'
11027 3' -63 NC_002794.1 + 100822 0.66 0.684693
Target:  5'- -cCGGGC-GGCgGGGGcCGGCagccgGGCUu -3'
miRNA:   3'- ccGCCCGaCUGgCCCCaGCCGa----UCGA- -5'
11027 3' -63 NC_002794.1 + 99572 0.67 0.617686
Target:  5'- cGCGGGCgagggggGugCGGaGGgcgCGGCggcGGCg -3'
miRNA:   3'- cCGCCCGa------CugGCC-CCa--GCCGa--UCGa -5'
11027 3' -63 NC_002794.1 + 98976 0.7 0.426424
Target:  5'- cGGCGGcGCcgUGGCCucGGuGGUCGGC-GGCUu -3'
miRNA:   3'- -CCGCC-CG--ACUGG--CC-CCAGCCGaUCGA- -5'
11027 3' -63 NC_002794.1 + 98926 0.67 0.598529
Target:  5'- aGCGGGCUGggcgcgGCCGGGaaggGGCUggGGCUc -3'
miRNA:   3'- cCGCCCGAC------UGGCCCcag-CCGA--UCGA- -5'
11027 3' -63 NC_002794.1 + 95839 0.72 0.33397
Target:  5'- cGGCGgcGGC-GGCCGGGGaggCGGCgGGCg -3'
miRNA:   3'- -CCGC--CCGaCUGGCCCCa--GCCGaUCGa -5'
11027 3' -63 NC_002794.1 + 95796 0.72 0.355652
Target:  5'- aGGCGcGGCggagGaACCGGGGgagCGGC-GGCg -3'
miRNA:   3'- -CCGC-CCGa---C-UGGCCCCa--GCCGaUCGa -5'
11027 3' -63 NC_002794.1 + 94281 0.71 0.386068
Target:  5'- cGGCGcGGCccGAgCGGGGggCGGCUcgGGCg -3'
miRNA:   3'- -CCGC-CCGa-CUgGCCCCa-GCCGA--UCGa -5'
11027 3' -63 NC_002794.1 + 94035 0.73 0.307256
Target:  5'- cGGCGGGCccgagagcggcggcgGugCGGGGgCGGCggggGGCg -3'
miRNA:   3'- -CCGCCCGa--------------CugGCCCCaGCCGa---UCGa -5'
11027 3' -63 NC_002794.1 + 92305 0.71 0.378305
Target:  5'- aGGCgGGGCUGGgCGcGGG-CGGCgggGGCc -3'
miRNA:   3'- -CCG-CCCGACUgGC-CCCaGCCGa--UCGa -5'
11027 3' -63 NC_002794.1 + 90945 0.71 0.401907
Target:  5'- gGGCGGGCUGugCGccgaggcccGGGcccgcuUCGGCgUGGCc -3'
miRNA:   3'- -CCGCCCGACugGC---------CCC------AGCCG-AUCGa -5'
11027 3' -63 NC_002794.1 + 87277 0.66 0.684693
Target:  5'- aGGcCGGGCgGGUgGGGGUgGGgaAGCg -3'
miRNA:   3'- -CC-GCCCGaCUGgCCCCAgCCgaUCGa -5'
11027 3' -63 NC_002794.1 + 86929 0.69 0.48689
Target:  5'- uGGCGGGCaGGCgGGGcGggaucCGGCgAGCg -3'
miRNA:   3'- -CCGCCCGaCUGgCCC-Ca----GCCGaUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.