Results 41 - 48 of 48 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 11027 | 3' | -63 | NC_002794.1 | + | 66856 | 0.67 | 0.6081 |
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Target: 5'- cGGCGcGGCgaGGCCGcGGcGUgCGGCUgAGCc -3' miRNA: 3'- -CCGC-CCGa-CUGGC-CC-CA-GCCGA-UCGa -5' |
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| 11027 | 3' | -63 | NC_002794.1 | + | 63996 | 0.7 | 0.46045 |
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Target: 5'- aGCGGGCUccGuCUGGGuccugCGGCUGGCg -3' miRNA: 3'- cCGCCCGA--CuGGCCCca---GCCGAUCGa -5' |
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| 11027 | 3' | -63 | NC_002794.1 | + | 55315 | 0.71 | 0.383728 |
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Target: 5'- cGGCGGGCgcgGGcggcuuccgaggacCCGGGGUCGcGCccgaGGCg -3' miRNA: 3'- -CCGCCCGa--CU--------------GGCCCCAGC-CGa---UCGa -5' |
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| 11027 | 3' | -63 | NC_002794.1 | + | 38439 | 0.67 | 0.579459 |
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Target: 5'- cGGCGGGCcgGACUGaGGaGcCGGCgcGGCc -3' miRNA: 3'- -CCGCCCGa-CUGGC-CC-CaGCCGa-UCGa -5' |
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| 11027 | 3' | -63 | NC_002794.1 | + | 32640 | 0.68 | 0.532454 |
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Target: 5'- aGGgGGGCgacGACCGGGGcgaCGGCg---- -3' miRNA: 3'- -CCgCCCGa--CUGGCCCCa--GCCGaucga -5' |
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| 11027 | 3' | -63 | NC_002794.1 | + | 32583 | 0.69 | 0.48689 |
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Target: 5'- cGGCGGuGCcggGGCCGGGGcCGG--GGCc -3' miRNA: 3'- -CCGCC-CGa--CUGGCCCCaGCCgaUCGa -5' |
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| 11027 | 3' | -63 | NC_002794.1 | + | 21521 | 0.81 | 0.087745 |
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Target: 5'- aGGaCGGGCgGAUCGGGaUCGGCUAGCUc -3' miRNA: 3'- -CC-GCCCGaCUGGCCCcAGCCGAUCGA- -5' |
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| 11027 | 3' | -63 | NC_002794.1 | + | 11534 | 0.69 | 0.46918 |
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Target: 5'- uGCGGGC-GACCGaGGaccgCGGCUGGUc -3' miRNA: 3'- cCGCCCGaCUGGCcCCa---GCCGAUCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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