Results 41 - 48 of 48 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 11027 | 3' | -63 | NC_002794.1 | + | 141399 | 0.68 | 0.569024 |
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Target: 5'- cGGgGGGCUcggcgacgacgauGACCucGGGGgCGGCgggGGCg -3' miRNA: 3'- -CCgCCCGA-------------CUGG--CCCCaGCCGa--UCGa -5' |
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| 11027 | 3' | -63 | NC_002794.1 | + | 107225 | 0.68 | 0.569971 |
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Target: 5'- gGGCGGcGCgcGACgGGGG-CGGCgucGCg -3' miRNA: 3'- -CCGCC-CGa-CUGgCCCCaGCCGau-CGa -5' |
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| 11027 | 3' | -63 | NC_002794.1 | + | 142214 | 0.68 | 0.569971 |
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Target: 5'- cGGCGGcaGCggcgGugCGGGGagCGGCggaGGCg -3' miRNA: 3'- -CCGCC--CGa---CugGCCCCa-GCCGa--UCGa -5' |
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| 11027 | 3' | -63 | NC_002794.1 | + | 119103 | 0.68 | 0.569971 |
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Target: 5'- uGGUGGGCguccaGAUCGGGGacgcagaaGGcCUGGCa -3' miRNA: 3'- -CCGCCCGa----CUGGCCCCag------CC-GAUCGa -5' |
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| 11027 | 3' | -63 | NC_002794.1 | + | 38439 | 0.67 | 0.579459 |
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Target: 5'- cGGCGGGCcgGACUGaGGaGcCGGCgcGGCc -3' miRNA: 3'- -CCGCCCGa-CUGGC-CC-CaGCCGa-UCGa -5' |
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| 11027 | 3' | -63 | NC_002794.1 | + | 137645 | 0.67 | 0.579459 |
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Target: 5'- uGGCGGGC--GCCGGGccucCGGCgccGCUg -3' miRNA: 3'- -CCGCCCGacUGGCCCca--GCCGau-CGA- -5' |
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| 11027 | 3' | -63 | NC_002794.1 | + | 98926 | 0.67 | 0.598529 |
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Target: 5'- aGCGGGCUGggcgcgGCCGGGaaggGGCUggGGCUc -3' miRNA: 3'- cCGCCCGAC------UGGCCCcag-CCGA--UCGA- -5' |
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| 11027 | 3' | -63 | NC_002794.1 | + | 116908 | 0.66 | 0.694169 |
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Target: 5'- cGGCGGcCgGuCCGGcGUCGGCUccGGCg -3' miRNA: 3'- -CCGCCcGaCuGGCCcCAGCCGA--UCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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