miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11027 5' -55.4 NC_002794.1 + 182348 0.66 0.962637
Target:  5'- -gGACgGGCgGGCGGGUGAccgggcgcacgGCCCcCCg -3'
miRNA:   3'- gaUUGaUCGgCUGCUCGCU-----------CGGGaGG- -5'
11027 5' -55.4 NC_002794.1 + 181227 0.66 0.962637
Target:  5'- -cGACgagauCCGGCGAcgGCGcGCCUUCCa -3'
miRNA:   3'- gaUUGauc--GGCUGCU--CGCuCGGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 76832 0.66 0.962637
Target:  5'- -cAGC-GGCCGGCGAuGCGcGCCggCCu -3'
miRNA:   3'- gaUUGaUCGGCUGCU-CGCuCGGgaGG- -5'
11027 5' -55.4 NC_002794.1 + 36106 0.66 0.959172
Target:  5'- uUGACcgAGCCGAUGAGauccCGGaucGCCCgCCg -3'
miRNA:   3'- gAUUGa-UCGGCUGCUC----GCU---CGGGaGG- -5'
11027 5' -55.4 NC_002794.1 + 293 0.66 0.959172
Target:  5'- cCUGGCgcGCCGaACGc-CGGGCCCgccCCa -3'
miRNA:   3'- -GAUUGauCGGC-UGCucGCUCGGGa--GG- -5'
11027 5' -55.4 NC_002794.1 + 69588 0.66 0.959172
Target:  5'- --cGCgcGUCgGACGAGCGGGaggccgCCUCCa -3'
miRNA:   3'- gauUGauCGG-CUGCUCGCUCg-----GGAGG- -5'
11027 5' -55.4 NC_002794.1 + 137637 0.66 0.959172
Target:  5'- -cGACgucCUGGCGGGCGccGGgCCUCCg -3'
miRNA:   3'- gaUUGaucGGCUGCUCGC--UCgGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 135481 0.66 0.959172
Target:  5'- -cGACgccGCCGuCGAcgcgcGCGGGCCCgaugCCc -3'
miRNA:   3'- gaUUGau-CGGCuGCU-----CGCUCGGGa---GG- -5'
11027 5' -55.4 NC_002794.1 + 82495 0.66 0.959172
Target:  5'- -cGGCccGCCgcGACGcGCGAGaCCUUCCa -3'
miRNA:   3'- gaUUGauCGG--CUGCuCGCUC-GGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 136760 0.66 0.959172
Target:  5'- -gAGCUGGCgGACGcGCGccacGCCCagcucgaggaUCCg -3'
miRNA:   3'- gaUUGAUCGgCUGCuCGCu---CGGG----------AGG- -5'
11027 5' -55.4 NC_002794.1 + 99543 0.66 0.958814
Target:  5'- --uGCgGGCCG-CGGaaaccgcGCGcGCCCUCCg -3'
miRNA:   3'- gauUGaUCGGCuGCU-------CGCuCGGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 113162 0.66 0.958091
Target:  5'- -cGugUAGCgCGcGCGGGCGgcggcggucgcggaGGCgCCUCCg -3'
miRNA:   3'- gaUugAUCG-GC-UGCUCGC--------------UCG-GGAGG- -5'
11027 5' -55.4 NC_002794.1 + 58589 0.66 0.955492
Target:  5'- --cACcAGCgCGGCGGGCuGGCCUUCg -3'
miRNA:   3'- gauUGaUCG-GCUGCUCGcUCGGGAGg -5'
11027 5' -55.4 NC_002794.1 + 58649 0.66 0.955492
Target:  5'- -cAGCUGGgCGACGGGCugcugcAGCCggCCg -3'
miRNA:   3'- gaUUGAUCgGCUGCUCGc-----UCGGgaGG- -5'
11027 5' -55.4 NC_002794.1 + 19235 0.66 0.954346
Target:  5'- cCUGAUcugAGCCGAUGAugugccgaccggccGCG-GCCC-CCg -3'
miRNA:   3'- -GAUUGa--UCGGCUGCU--------------CGCuCGGGaGG- -5'
11027 5' -55.4 NC_002794.1 + 147493 0.66 0.951593
Target:  5'- -gAGCUGGCCGA-GAGCuucaccGAGuUCCUCg -3'
miRNA:   3'- gaUUGAUCGGCUgCUCG------CUC-GGGAGg -5'
11027 5' -55.4 NC_002794.1 + 95848 0.66 0.951593
Target:  5'- -cGGCcggggAGgCGGCGGGCGGGCCgUUUCa -3'
miRNA:   3'- gaUUGa----UCgGCUGCUCGCUCGG-GAGG- -5'
11027 5' -55.4 NC_002794.1 + 114180 0.66 0.951593
Target:  5'- gCUggUUGGCCaGGCGcAGCGGcGCCacggCCg -3'
miRNA:   3'- -GAuuGAUCGG-CUGC-UCGCU-CGGga--GG- -5'
11027 5' -55.4 NC_002794.1 + 150056 0.66 0.951593
Target:  5'- -cGACUgcGGUgGgACGAGCGcgcucuGGCCUUCCu -3'
miRNA:   3'- gaUUGA--UCGgC-UGCUCGC------UCGGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 156420 0.66 0.951593
Target:  5'- -cGGCcacGGCCGGCGGGUGAGagaCCggucgcgCCg -3'
miRNA:   3'- gaUUGa--UCGGCUGCUCGCUCg--GGa------GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.