miRNA display CGI


Results 21 - 40 of 105 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11027 5' -55.4 NC_002794.1 + 76832 0.66 0.962637
Target:  5'- -cAGC-GGCCGGCGAuGCGcGCCggCCu -3'
miRNA:   3'- gaUUGaUCGGCUGCU-CGCuCGGgaGG- -5'
11027 5' -55.4 NC_002794.1 + 82495 0.66 0.959172
Target:  5'- -cGGCccGCCgcGACGcGCGAGaCCUUCCa -3'
miRNA:   3'- gaUUGauCGG--CUGCuCGCUC-GGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 135481 0.66 0.959172
Target:  5'- -cGACgccGCCGuCGAcgcgcGCGGGCCCgaugCCc -3'
miRNA:   3'- gaUUGau-CGGCuGCU-----CGCUCGGGa---GG- -5'
11027 5' -55.4 NC_002794.1 + 137637 0.66 0.959172
Target:  5'- -cGACgucCUGGCGGGCGccGGgCCUCCg -3'
miRNA:   3'- gaUUGaucGGCUGCUCGC--UCgGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 69588 0.66 0.959172
Target:  5'- --cGCgcGUCgGACGAGCGGGaggccgCCUCCa -3'
miRNA:   3'- gauUGauCGG-CUGCUCGCUCg-----GGAGG- -5'
11027 5' -55.4 NC_002794.1 + 293 0.66 0.959172
Target:  5'- cCUGGCgcGCCGaACGc-CGGGCCCgccCCa -3'
miRNA:   3'- -GAUUGauCGGC-UGCucGCUCGGGa--GG- -5'
11027 5' -55.4 NC_002794.1 + 36106 0.66 0.959172
Target:  5'- uUGACcgAGCCGAUGAGauccCGGaucGCCCgCCg -3'
miRNA:   3'- gAUUGa-UCGGCUGCUC----GCU---CGGGaGG- -5'
11027 5' -55.4 NC_002794.1 + 156420 0.66 0.951593
Target:  5'- -cGGCcacGGCCGGCGGGUGAGagaCCggucgcgCCg -3'
miRNA:   3'- gaUUGa--UCGGCUGCUCGCUCg--GGa------GG- -5'
11027 5' -55.4 NC_002794.1 + 19235 0.66 0.954346
Target:  5'- cCUGAUcugAGCCGAUGAugugccgaccggccGCG-GCCC-CCg -3'
miRNA:   3'- -GAUUGa--UCGGCUGCU--------------CGCuCGGGaGG- -5'
11027 5' -55.4 NC_002794.1 + 58649 0.66 0.955492
Target:  5'- -cAGCUGGgCGACGGGCugcugcAGCCggCCg -3'
miRNA:   3'- gaUUGAUCgGCUGCUCGc-----UCGGgaGG- -5'
11027 5' -55.4 NC_002794.1 + 58589 0.66 0.955492
Target:  5'- --cACcAGCgCGGCGGGCuGGCCUUCg -3'
miRNA:   3'- gauUGaUCG-GCUGCUCGcUCGGGAGg -5'
11027 5' -55.4 NC_002794.1 + 113162 0.66 0.958091
Target:  5'- -cGugUAGCgCGcGCGGGCGgcggcggucgcggaGGCgCCUCCg -3'
miRNA:   3'- gaUugAUCG-GC-UGCUCGC--------------UCG-GGAGG- -5'
11027 5' -55.4 NC_002794.1 + 99543 0.66 0.958814
Target:  5'- --uGCgGGCCG-CGGaaaccgcGCGcGCCCUCCg -3'
miRNA:   3'- gauUGaUCGGCuGCU-------CGCuCGGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 136760 0.66 0.959172
Target:  5'- -gAGCUGGCgGACGcGCGccacGCCCagcucgaggaUCCg -3'
miRNA:   3'- gaUUGAUCGgCUGCuCGCu---CGGG----------AGG- -5'
11027 5' -55.4 NC_002794.1 + 145333 0.67 0.933748
Target:  5'- -cGGCgcucgGGCC--CGAGCGGGCCCgagCUg -3'
miRNA:   3'- gaUUGa----UCGGcuGCUCGCUCGGGa--GG- -5'
11027 5' -55.4 NC_002794.1 + 72876 0.67 0.933748
Target:  5'- -cGACUccucGGCCGGgucGCG-GCCCUCCu -3'
miRNA:   3'- gaUUGA----UCGGCUgcuCGCuCGGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 144774 0.67 0.938552
Target:  5'- -cAGCUGGCCGGCGucgccGCuGGCUuCUCUg -3'
miRNA:   3'- gaUUGAUCGGCUGCu----CGcUCGG-GAGG- -5'
11027 5' -55.4 NC_002794.1 + 62494 0.67 0.938552
Target:  5'- -cGAgUGGaCGGCGGGCGgcgccgccGGCgCCUCCg -3'
miRNA:   3'- gaUUgAUCgGCUGCUCGC--------UCG-GGAGG- -5'
11027 5' -55.4 NC_002794.1 + 145893 0.67 0.938552
Target:  5'- -aAGCggcgAGCgCGACGGGgGAGUCgaCCg -3'
miRNA:   3'- gaUUGa---UCG-GCUGCUCgCUCGGgaGG- -5'
11027 5' -55.4 NC_002794.1 + 142578 0.67 0.933748
Target:  5'- -gAGC-AGCgCGAUGGGCGcGCCCUg- -3'
miRNA:   3'- gaUUGaUCG-GCUGCUCGCuCGGGAgg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.