miRNA display CGI


Results 61 - 80 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11027 5' -55.4 NC_002794.1 + 118035 0.68 0.900089
Target:  5'- -cAGCUccAGCaGGCGAGCGuGGCCCgUCUc -3'
miRNA:   3'- gaUUGA--UCGgCUGCUCGC-UCGGG-AGG- -5'
11027 5' -55.4 NC_002794.1 + 125755 0.68 0.90444
Target:  5'- -gGACggcGGCCGGCGGcucgccacccggcuGCGAGCgCUCa -3'
miRNA:   3'- gaUUGa--UCGGCUGCU--------------CGCUCGgGAGg -5'
11027 5' -55.4 NC_002794.1 + 32606 0.68 0.906272
Target:  5'- -gGGCcggGGCCGGgGAuCGGGCCCgCCg -3'
miRNA:   3'- gaUUGa--UCGGCUgCUcGCUCGGGaGG- -5'
11027 5' -55.4 NC_002794.1 + 189324 0.68 0.912227
Target:  5'- -cAGCUGGUCGGgGGGC-AGCagCUCCa -3'
miRNA:   3'- gaUUGAUCGGCUgCUCGcUCGg-GAGG- -5'
11027 5' -55.4 NC_002794.1 + 115195 0.68 0.906272
Target:  5'- -cGGCggucgAGCCGGCGuAGCGccuccGCCUUCUg -3'
miRNA:   3'- gaUUGa----UCGGCUGC-UCGCu----CGGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 34988 0.69 0.865883
Target:  5'- -aAACUGcGCCGGCu-GCGGGCCCg-- -3'
miRNA:   3'- gaUUGAU-CGGCUGcuCGCUCGGGagg -5'
11027 5' -55.4 NC_002794.1 + 138729 0.69 0.858413
Target:  5'- -gAGCcGGCuCGACGGGguccccGGCCCUCCg -3'
miRNA:   3'- gaUUGaUCG-GCUGCUCgc----UCGGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 47367 0.69 0.850744
Target:  5'- --cGCUcaAGCCGAggcCGAGCccGAGCCCgagCCc -3'
miRNA:   3'- gauUGA--UCGGCU---GCUCG--CUCGGGa--GG- -5'
11027 5' -55.4 NC_002794.1 + 185364 0.69 0.850744
Target:  5'- -gAGCgGGCCGaacgccGCGAGCGAGgCCagCCa -3'
miRNA:   3'- gaUUGaUCGGC------UGCUCGCUCgGGa-GG- -5'
11027 5' -55.4 NC_002794.1 + 126429 0.69 0.865883
Target:  5'- --uGCUGGUCGAgGuGUGGGCgCCUCg -3'
miRNA:   3'- gauUGAUCGGCUgCuCGCUCG-GGAGg -5'
11027 5' -55.4 NC_002794.1 + 43519 0.69 0.873151
Target:  5'- -aAGCgcGCCGguaGCucGCGAGCCCgUCCa -3'
miRNA:   3'- gaUUGauCGGC---UGcuCGCUCGGG-AGG- -5'
11027 5' -55.4 NC_002794.1 + 192957 0.69 0.871714
Target:  5'- -aGACaGGCCGACGAGCcgugcagGAccagggcgcggucGCCCUCg -3'
miRNA:   3'- gaUUGaUCGGCUGCUCG-------CU-------------CGGGAGg -5'
11027 5' -55.4 NC_002794.1 + 115047 0.69 0.865883
Target:  5'- -cGACcGGgCGGCGGGCGGcagcGCCgUCCa -3'
miRNA:   3'- gaUUGaUCgGCUGCUCGCU----CGGgAGG- -5'
11027 5' -55.4 NC_002794.1 + 183679 0.69 0.873151
Target:  5'- ------cGCCGACGGGuCGAGCgCCcgCCg -3'
miRNA:   3'- gauugauCGGCUGCUC-GCUCG-GGa-GG- -5'
11027 5' -55.4 NC_002794.1 + 51383 0.69 0.873151
Target:  5'- -----cGGCCGGCGAcaGGcGCCCUCCg -3'
miRNA:   3'- gauugaUCGGCUGCUcgCU-CGGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 53274 0.7 0.818222
Target:  5'- -cAACgGGgCGGCGAGCGA-CCaCUCCa -3'
miRNA:   3'- gaUUGaUCgGCUGCUCGCUcGG-GAGG- -5'
11027 5' -55.4 NC_002794.1 + 110448 0.7 0.818222
Target:  5'- gUGGCggaGGCCGGCGAGCcGGCUCgUCg -3'
miRNA:   3'- gAUUGa--UCGGCUGCUCGcUCGGG-AGg -5'
11027 5' -55.4 NC_002794.1 + 113665 0.7 0.818222
Target:  5'- -cGGCguccAGCgCGGCGAGCaGGCCCgCCa -3'
miRNA:   3'- gaUUGa---UCG-GCUGCUCGcUCGGGaGG- -5'
11027 5' -55.4 NC_002794.1 + 179989 0.7 0.818222
Target:  5'- -aGGCggUGGCCG-CGAcgGCGGGCCCggCCa -3'
miRNA:   3'- gaUUG--AUCGGCuGCU--CGCUCGGGa-GG- -5'
11027 5' -55.4 NC_002794.1 + 109687 0.7 0.818222
Target:  5'- -cAGCUAGCCGACcccGGUcAGCCCgCCc -3'
miRNA:   3'- gaUUGAUCGGCUGc--UCGcUCGGGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.