Results 1 - 20 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11027 | 5' | -55.4 | NC_002794.1 | + | 189651 | 0.79 | 0.337122 |
Target: 5'- gCUGACUAGCCGGCuggccGAGCGGucGCCCcggCCg -3' miRNA: 3'- -GAUUGAUCGGCUG-----CUCGCU--CGGGa--GG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 22945 | 0.76 | 0.489681 |
Target: 5'- -cGGCUGGCCGACGGGCcGGCgCCguugUCCc -3' miRNA: 3'- gaUUGAUCGGCUGCUCGcUCG-GG----AGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 11646 | 0.74 | 0.627156 |
Target: 5'- -cGACgggcGGCCGACGAcGCG-GCCCgCCg -3' miRNA: 3'- gaUUGa---UCGGCUGCU-CGCuCGGGaGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 92226 | 0.74 | 0.597021 |
Target: 5'- --cGCUAcGCCGGCGAcGCcaagGAGCCCUCg -3' miRNA: 3'- gauUGAU-CGGCUGCU-CG----CUCGGGAGg -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 60222 | 0.73 | 0.667349 |
Target: 5'- --cGCgacGCCGcCGAGCGcGCCCUCUa -3' miRNA: 3'- gauUGau-CGGCuGCUCGCuCGGGAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 66502 | 0.73 | 0.647276 |
Target: 5'- gUAACUGaUCGGCGAGCGAuagGCCgUCCc -3' miRNA: 3'- gAUUGAUcGGCUGCUCGCU---CGGgAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 101681 | 0.73 | 0.677349 |
Target: 5'- ------cGCCGGCGGagcGCGAGCCCgagCCg -3' miRNA: 3'- gauugauCGGCUGCU---CGCUCGGGa--GG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 109182 | 0.73 | 0.677349 |
Target: 5'- gUAGC-GGCgGAgGcAGCGGGUCCUCCa -3' miRNA: 3'- gAUUGaUCGgCUgC-UCGCUCGGGAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 41739 | 0.72 | 0.736296 |
Target: 5'- uUGAuCUcGCaGAUGAGCGAGCCCgcuUCCa -3' miRNA: 3'- gAUU-GAuCGgCUGCUCGCUCGGG---AGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 42602 | 0.72 | 0.707099 |
Target: 5'- -cGGC-GGCCGG-GAGCGGGCUCUCUc -3' miRNA: 3'- gaUUGaUCGGCUgCUCGCUCGGGAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 191931 | 0.72 | 0.736296 |
Target: 5'- -aGACgagAGgaUCGGCG-GCGAGUCCUCCg -3' miRNA: 3'- gaUUGa--UC--GGCUGCuCGCUCGGGAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 149690 | 0.72 | 0.725669 |
Target: 5'- -cGACUGGCCGcgggggccgccugGCGGGUGGGCCg-CCu -3' miRNA: 3'- gaUUGAUCGGC-------------UGCUCGCUCGGgaGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 55982 | 0.72 | 0.687313 |
Target: 5'- aUGGCgUAGCCG-CGGGCGAGCaCCagCa -3' miRNA: 3'- gAUUG-AUCGGCuGCUCGCUCG-GGagG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 49730 | 0.71 | 0.773959 |
Target: 5'- -gAGCcAGaCCGugGuGGCGAGCCCguaggCCg -3' miRNA: 3'- gaUUGaUC-GGCugC-UCGCUCGGGa----GG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 101643 | 0.71 | 0.745865 |
Target: 5'- -gAGCgugGGCgGGCGGGCGgcgguuAGCCCgUCCg -3' miRNA: 3'- gaUUGa--UCGgCUGCUCGC------UCGGG-AGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 124903 | 0.71 | 0.78309 |
Target: 5'- -gAGCUGGUCcGCGAgaccgGCGAGUCCUCg -3' miRNA: 3'- gaUUGAUCGGcUGCU-----CGCUCGGGAGg -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 84755 | 0.71 | 0.78309 |
Target: 5'- -cGACcGGCCG-CGAGaGGGCCgUCCg -3' miRNA: 3'- gaUUGaUCGGCuGCUCgCUCGGgAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 18719 | 0.71 | 0.755337 |
Target: 5'- -gGACgucggAGCCGACGAGCc-GCCCcaacgCCa -3' miRNA: 3'- gaUUGa----UCGGCUGCUCGcuCGGGa----GG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 13812 | 0.7 | 0.800951 |
Target: 5'- -gGGCccGGCCGGCG-GCGAcGgCCUCCu -3' miRNA: 3'- gaUUGa-UCGGCUGCuCGCU-CgGGAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 153018 | 0.7 | 0.817373 |
Target: 5'- -gGACUGGgCGACGGggacgggaacgacGCGGGuCCCUCg -3' miRNA: 3'- gaUUGAUCgGCUGCU-------------CGCUC-GGGAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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