miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11027 5' -55.4 NC_002794.1 + 189651 0.79 0.337122
Target:  5'- gCUGACUAGCCGGCuggccGAGCGGucGCCCcggCCg -3'
miRNA:   3'- -GAUUGAUCGGCUG-----CUCGCU--CGGGa--GG- -5'
11027 5' -55.4 NC_002794.1 + 22945 0.76 0.489681
Target:  5'- -cGGCUGGCCGACGGGCcGGCgCCguugUCCc -3'
miRNA:   3'- gaUUGAUCGGCUGCUCGcUCG-GG----AGG- -5'
11027 5' -55.4 NC_002794.1 + 92226 0.74 0.597021
Target:  5'- --cGCUAcGCCGGCGAcGCcaagGAGCCCUCg -3'
miRNA:   3'- gauUGAU-CGGCUGCU-CG----CUCGGGAGg -5'
11027 5' -55.4 NC_002794.1 + 11646 0.74 0.627156
Target:  5'- -cGACgggcGGCCGACGAcGCG-GCCCgCCg -3'
miRNA:   3'- gaUUGa---UCGGCUGCU-CGCuCGGGaGG- -5'
11027 5' -55.4 NC_002794.1 + 66502 0.73 0.647276
Target:  5'- gUAACUGaUCGGCGAGCGAuagGCCgUCCc -3'
miRNA:   3'- gAUUGAUcGGCUGCUCGCU---CGGgAGG- -5'
11027 5' -55.4 NC_002794.1 + 60222 0.73 0.667349
Target:  5'- --cGCgacGCCGcCGAGCGcGCCCUCUa -3'
miRNA:   3'- gauUGau-CGGCuGCUCGCuCGGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 109182 0.73 0.677349
Target:  5'- gUAGC-GGCgGAgGcAGCGGGUCCUCCa -3'
miRNA:   3'- gAUUGaUCGgCUgC-UCGCUCGGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 101681 0.73 0.677349
Target:  5'- ------cGCCGGCGGagcGCGAGCCCgagCCg -3'
miRNA:   3'- gauugauCGGCUGCU---CGCUCGGGa--GG- -5'
11027 5' -55.4 NC_002794.1 + 55982 0.72 0.687313
Target:  5'- aUGGCgUAGCCG-CGGGCGAGCaCCagCa -3'
miRNA:   3'- gAUUG-AUCGGCuGCUCGCUCG-GGagG- -5'
11027 5' -55.4 NC_002794.1 + 42602 0.72 0.707099
Target:  5'- -cGGC-GGCCGG-GAGCGGGCUCUCUc -3'
miRNA:   3'- gaUUGaUCGGCUgCUCGCUCGGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 149690 0.72 0.725669
Target:  5'- -cGACUGGCCGcgggggccgccugGCGGGUGGGCCg-CCu -3'
miRNA:   3'- gaUUGAUCGGC-------------UGCUCGCUCGGgaGG- -5'
11027 5' -55.4 NC_002794.1 + 41739 0.72 0.736296
Target:  5'- uUGAuCUcGCaGAUGAGCGAGCCCgcuUCCa -3'
miRNA:   3'- gAUU-GAuCGgCUGCUCGCUCGGG---AGG- -5'
11027 5' -55.4 NC_002794.1 + 191931 0.72 0.736296
Target:  5'- -aGACgagAGgaUCGGCG-GCGAGUCCUCCg -3'
miRNA:   3'- gaUUGa--UC--GGCUGCuCGCUCGGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 101643 0.71 0.745865
Target:  5'- -gAGCgugGGCgGGCGGGCGgcgguuAGCCCgUCCg -3'
miRNA:   3'- gaUUGa--UCGgCUGCUCGC------UCGGG-AGG- -5'
11027 5' -55.4 NC_002794.1 + 18719 0.71 0.755337
Target:  5'- -gGACgucggAGCCGACGAGCc-GCCCcaacgCCa -3'
miRNA:   3'- gaUUGa----UCGGCUGCUCGcuCGGGa----GG- -5'
11027 5' -55.4 NC_002794.1 + 49730 0.71 0.773959
Target:  5'- -gAGCcAGaCCGugGuGGCGAGCCCguaggCCg -3'
miRNA:   3'- gaUUGaUC-GGCugC-UCGCUCGGGa----GG- -5'
11027 5' -55.4 NC_002794.1 + 124903 0.71 0.78309
Target:  5'- -gAGCUGGUCcGCGAgaccgGCGAGUCCUCg -3'
miRNA:   3'- gaUUGAUCGGcUGCU-----CGCUCGGGAGg -5'
11027 5' -55.4 NC_002794.1 + 84755 0.71 0.78309
Target:  5'- -cGACcGGCCG-CGAGaGGGCCgUCCg -3'
miRNA:   3'- gaUUGaUCGGCuGCUCgCUCGGgAGG- -5'
11027 5' -55.4 NC_002794.1 + 182952 0.7 0.79209
Target:  5'- -gGGCUcgAGCCGACG-GCG-GCCggCUCCu -3'
miRNA:   3'- gaUUGA--UCGGCUGCuCGCuCGG--GAGG- -5'
11027 5' -55.4 NC_002794.1 + 38450 0.7 0.800071
Target:  5'- aCUGAggAGCCGGCGcggccgcGGCGcGCCCUUUa -3'
miRNA:   3'- -GAUUgaUCGGCUGC-------UCGCuCGGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.