Results 61 - 80 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11027 | 5' | -55.4 | NC_002794.1 | + | 102080 | 0.67 | 0.928714 |
Target: 5'- cCUGccGCgGGCCGACGAGCcgccGCCCa-- -3' miRNA: 3'- -GAU--UGaUCGGCUGCUCGcu--CGGGagg -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 121943 | 0.67 | 0.928714 |
Target: 5'- -cGACgcGCUGAuCGAGCGccuggAGCgCUCCg -3' miRNA: 3'- gaUUGauCGGCU-GCUCGC-----UCGgGAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 142578 | 0.67 | 0.933748 |
Target: 5'- -gAGC-AGCgCGAUGGGCGcGCCCUg- -3' miRNA: 3'- gaUUGaUCG-GCUGCUCGCuCGGGAgg -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 32271 | 0.67 | 0.933748 |
Target: 5'- -cGGCcGGCCGaucgGCGAGCGAcGCCg-CCg -3' miRNA: 3'- gaUUGaUCGGC----UGCUCGCU-CGGgaGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 72876 | 0.67 | 0.933748 |
Target: 5'- -cGACUccucGGCCGGgucGCG-GCCCUCCu -3' miRNA: 3'- gaUUGA----UCGGCUgcuCGCuCGGGAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 8106 | 0.67 | 0.933748 |
Target: 5'- uCUAGCgccaCCGAgCGGGCGGcGgCCUCCu -3' miRNA: 3'- -GAUUGauc-GGCU-GCUCGCU-CgGGAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 145333 | 0.67 | 0.933748 |
Target: 5'- -cGGCgcucgGGCC--CGAGCGGGCCCgagCUg -3' miRNA: 3'- gaUUGa----UCGGcuGCUCGCUCGGGa--GG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 177771 | 0.67 | 0.938552 |
Target: 5'- -gGACaAGCgGGCGuauGGCGGGCcgucauCCUCCa -3' miRNA: 3'- gaUUGaUCGgCUGC---UCGCUCG------GGAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 144774 | 0.67 | 0.938552 |
Target: 5'- -cAGCUGGCCGGCGucgccGCuGGCUuCUCUg -3' miRNA: 3'- gaUUGAUCGGCUGCu----CGcUCGG-GAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 62494 | 0.67 | 0.938552 |
Target: 5'- -cGAgUGGaCGGCGGGCGgcgccgccGGCgCCUCCg -3' miRNA: 3'- gaUUgAUCgGCUGCUCGC--------UCG-GGAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 145893 | 0.67 | 0.938552 |
Target: 5'- -aAGCggcgAGCgCGACGGGgGAGUCgaCCg -3' miRNA: 3'- gaUUGa---UCG-GCUGCUCgCUCGGgaGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 84284 | 0.66 | 0.943126 |
Target: 5'- -cAGCU-GCCGACgggGAGCGgcGGCgCUUCCu -3' miRNA: 3'- gaUUGAuCGGCUG---CUCGC--UCG-GGAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 127798 | 0.66 | 0.943126 |
Target: 5'- -cGGCUccgAGUCGAcgcCGAGCGAGCgC-CCg -3' miRNA: 3'- gaUUGA---UCGGCU---GCUCGCUCGgGaGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 70542 | 0.66 | 0.943126 |
Target: 5'- -cAGC-AGCCGAuCGuGCgccucGAGCCgCUCCa -3' miRNA: 3'- gaUUGaUCGGCU-GCuCG-----CUCGG-GAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 149215 | 0.66 | 0.943126 |
Target: 5'- -cGGCUGGCCGGa-AGCGAGgCgCCgCCg -3' miRNA: 3'- gaUUGAUCGGCUgcUCGCUC-G-GGaGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 57982 | 0.66 | 0.943126 |
Target: 5'- -cGACggcgAGCCGACGcGCcAGgCCUUCg -3' miRNA: 3'- gaUUGa---UCGGCUGCuCGcUCgGGAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 190154 | 0.66 | 0.947472 |
Target: 5'- --uACU-GCUGGCG-GCG-GCUCUCCu -3' miRNA: 3'- gauUGAuCGGCUGCuCGCuCGGGAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 17504 | 0.66 | 0.947472 |
Target: 5'- -cGACgccGGCCGA-GAuCGGcGCCCUCCu -3' miRNA: 3'- gaUUGa--UCGGCUgCUcGCU-CGGGAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 49936 | 0.66 | 0.947472 |
Target: 5'- -aAACaAGUgGACGGGCaGGCgCUCCc -3' miRNA: 3'- gaUUGaUCGgCUGCUCGcUCGgGAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 19529 | 0.66 | 0.947472 |
Target: 5'- ------cGCCGGCGcGGCGcGGCCCgCCg -3' miRNA: 3'- gauugauCGGCUGC-UCGC-UCGGGaGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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