miRNA display CGI


Results 41 - 60 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11027 5' -55.4 NC_002794.1 + 142578 0.67 0.933748
Target:  5'- -gAGC-AGCgCGAUGGGCGcGCCCUg- -3'
miRNA:   3'- gaUUGaUCG-GCUGCUCGCuCGGGAgg -5'
11027 5' -55.4 NC_002794.1 + 145333 0.67 0.933748
Target:  5'- -cGGCgcucgGGCC--CGAGCGGGCCCgagCUg -3'
miRNA:   3'- gaUUGa----UCGGcuGCUCGCUCGGGa--GG- -5'
11027 5' -55.4 NC_002794.1 + 72876 0.67 0.933748
Target:  5'- -cGACUccucGGCCGGgucGCG-GCCCUCCu -3'
miRNA:   3'- gaUUGA----UCGGCUgcuCGCuCGGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 121943 0.67 0.928714
Target:  5'- -cGACgcGCUGAuCGAGCGccuggAGCgCUCCg -3'
miRNA:   3'- gaUUGauCGGCU-GCUCGC-----UCGgGAGG- -5'
11027 5' -55.4 NC_002794.1 + 102080 0.67 0.928714
Target:  5'- cCUGccGCgGGCCGACGAGCcgccGCCCa-- -3'
miRNA:   3'- -GAU--UGaUCGGCUGCUCGcu--CGGGagg -5'
11027 5' -55.4 NC_002794.1 + 32033 0.67 0.928714
Target:  5'- -cGGCgcuGCCGAUacagcGGCGuGUCCUCCa -3'
miRNA:   3'- gaUUGau-CGGCUGc----UCGCuCGGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 194140 0.67 0.923449
Target:  5'- -cAGC-GGCCGcagcaGCGcccGCGAGCCCUgCCg -3'
miRNA:   3'- gaUUGaUCGGC-----UGCu--CGCUCGGGA-GG- -5'
11027 5' -55.4 NC_002794.1 + 145573 0.67 0.923449
Target:  5'- -gGACgagcGCCGACgGAGCGgcGGCCggCUCCc -3'
miRNA:   3'- gaUUGau--CGGCUG-CUCGC--UCGG--GAGG- -5'
11027 5' -55.4 NC_002794.1 + 104440 0.67 0.917953
Target:  5'- -gGACgccGCCG-CGGGCG-GCCCgagCCc -3'
miRNA:   3'- gaUUGau-CGGCuGCUCGCuCGGGa--GG- -5'
11027 5' -55.4 NC_002794.1 + 145192 0.67 0.917953
Target:  5'- ----aUGGUCGcCGcGGCG-GCCCUCCg -3'
miRNA:   3'- gauugAUCGGCuGC-UCGCuCGGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 20533 0.67 0.917953
Target:  5'- -gGACUGGCguucgcgaCGACGGGCGAccggaucccgccGUCgCUCCg -3'
miRNA:   3'- gaUUGAUCG--------GCUGCUCGCU------------CGG-GAGG- -5'
11027 5' -55.4 NC_002794.1 + 189324 0.68 0.912227
Target:  5'- -cAGCUGGUCGGgGGGC-AGCagCUCCa -3'
miRNA:   3'- gaUUGAUCGGCUgCUCGcUCGg-GAGG- -5'
11027 5' -55.4 NC_002794.1 + 115195 0.68 0.906272
Target:  5'- -cGGCggucgAGCCGGCGuAGCGccuccGCCUUCUg -3'
miRNA:   3'- gaUUGa----UCGGCUGC-UCGCu----CGGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 32606 0.68 0.906272
Target:  5'- -gGGCcggGGCCGGgGAuCGGGCCCgCCg -3'
miRNA:   3'- gaUUGa--UCGGCUgCUcGCUCGGGaGG- -5'
11027 5' -55.4 NC_002794.1 + 125755 0.68 0.90444
Target:  5'- -gGACggcGGCCGGCGGcucgccacccggcuGCGAGCgCUCa -3'
miRNA:   3'- gaUUGa--UCGGCUGCU--------------CGCUCGgGAGg -5'
11027 5' -55.4 NC_002794.1 + 118035 0.68 0.900089
Target:  5'- -cAGCUccAGCaGGCGAGCGuGGCCCgUCUc -3'
miRNA:   3'- gaUUGA--UCGgCUGCUCGC-UCGGG-AGG- -5'
11027 5' -55.4 NC_002794.1 + 77398 0.68 0.900089
Target:  5'- aCUAcCUGGCCGuCG-GCGAGaUCCUgCa -3'
miRNA:   3'- -GAUuGAUCGGCuGCuCGCUC-GGGAgG- -5'
11027 5' -55.4 NC_002794.1 + 119235 0.68 0.893683
Target:  5'- -aGGC-GGUCGAgGAGCGuGUCCUCg -3'
miRNA:   3'- gaUUGaUCGGCUgCUCGCuCGGGAGg -5'
11027 5' -55.4 NC_002794.1 + 34634 0.68 0.893683
Target:  5'- cCUGACcgAGCUGACGAGCauGGCCUa-- -3'
miRNA:   3'- -GAUUGa-UCGGCUGCUCGc-UCGGGagg -5'
11027 5' -55.4 NC_002794.1 + 59214 0.68 0.893683
Target:  5'- -cGGCgucucGGCCGcgGCGcGCGAGCUCUUCg -3'
miRNA:   3'- gaUUGa----UCGGC--UGCuCGCUCGGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.