Results 61 - 80 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11027 | 5' | -55.4 | NC_002794.1 | + | 59214 | 0.68 | 0.893683 |
Target: 5'- -cGGCgucucGGCCGcgGCGcGCGAGCUCUUCg -3' miRNA: 3'- gaUUGa----UCGGC--UGCuCGCUCGGGAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 57937 | 0.68 | 0.887055 |
Target: 5'- -cGACUucGCCGACGcgcuGCGcAGCCUgugCCa -3' miRNA: 3'- gaUUGAu-CGGCUGCu---CGC-UCGGGa--GG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 185267 | 0.68 | 0.880209 |
Target: 5'- -gGACgccGCCGGcCGAGUGGGCCg-CCg -3' miRNA: 3'- gaUUGau-CGGCU-GCUCGCUCGGgaGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 115926 | 0.68 | 0.880209 |
Target: 5'- uUGGCgcGgCGGCGGGCcGGCCCgCCg -3' miRNA: 3'- gAUUGauCgGCUGCUCGcUCGGGaGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 63934 | 0.68 | 0.880209 |
Target: 5'- -----cGGCCGGCGAGUcucGAGUCCgacgCCu -3' miRNA: 3'- gauugaUCGGCUGCUCG---CUCGGGa---GG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 51383 | 0.69 | 0.873151 |
Target: 5'- -----cGGCCGGCGAcaGGcGCCCUCCg -3' miRNA: 3'- gauugaUCGGCUGCUcgCU-CGGGAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 183679 | 0.69 | 0.873151 |
Target: 5'- ------cGCCGACGGGuCGAGCgCCcgCCg -3' miRNA: 3'- gauugauCGGCUGCUC-GCUCG-GGa-GG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 43519 | 0.69 | 0.873151 |
Target: 5'- -aAGCgcGCCGguaGCucGCGAGCCCgUCCa -3' miRNA: 3'- gaUUGauCGGC---UGcuCGCUCGGG-AGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 192957 | 0.69 | 0.871714 |
Target: 5'- -aGACaGGCCGACGAGCcgugcagGAccagggcgcggucGCCCUCg -3' miRNA: 3'- gaUUGaUCGGCUGCUCG-------CU-------------CGGGAGg -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 34988 | 0.69 | 0.865883 |
Target: 5'- -aAACUGcGCCGGCu-GCGGGCCCg-- -3' miRNA: 3'- gaUUGAU-CGGCUGcuCGCUCGGGagg -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 126429 | 0.69 | 0.865883 |
Target: 5'- --uGCUGGUCGAgGuGUGGGCgCCUCg -3' miRNA: 3'- gauUGAUCGGCUgCuCGCUCG-GGAGg -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 115047 | 0.69 | 0.865883 |
Target: 5'- -cGACcGGgCGGCGGGCGGcagcGCCgUCCa -3' miRNA: 3'- gaUUGaUCgGCUGCUCGCU----CGGgAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 138729 | 0.69 | 0.858413 |
Target: 5'- -gAGCcGGCuCGACGGGguccccGGCCCUCCg -3' miRNA: 3'- gaUUGaUCG-GCUGCUCgc----UCGGGAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 47367 | 0.69 | 0.850744 |
Target: 5'- --cGCUcaAGCCGAggcCGAGCccGAGCCCgagCCc -3' miRNA: 3'- gauUGA--UCGGCU---GCUCG--CUCGGGa--GG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 185364 | 0.69 | 0.850744 |
Target: 5'- -gAGCgGGCCGaacgccGCGAGCGAGgCCagCCa -3' miRNA: 3'- gaUUGaUCGGC------UGCUCGCUCgGGa-GG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 43651 | 0.7 | 0.834839 |
Target: 5'- --cGCUGccGCCGaACGAGcCGGGCUCUCg -3' miRNA: 3'- gauUGAU--CGGC-UGCUC-GCUCGGGAGg -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 53274 | 0.7 | 0.818222 |
Target: 5'- -cAACgGGgCGGCGAGCGA-CCaCUCCa -3' miRNA: 3'- gaUUGaUCgGCUGCUCGCUcGG-GAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 110448 | 0.7 | 0.818222 |
Target: 5'- gUGGCggaGGCCGGCGAGCcGGCUCgUCg -3' miRNA: 3'- gAUUGa--UCGGCUGCUCGcUCGGG-AGg -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 113665 | 0.7 | 0.818222 |
Target: 5'- -cGGCguccAGCgCGGCGAGCaGGCCCgCCa -3' miRNA: 3'- gaUUGa---UCG-GCUGCUCGcUCGGGaGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 109687 | 0.7 | 0.818222 |
Target: 5'- -cAGCUAGCCGACcccGGUcAGCCCgCCc -3' miRNA: 3'- gaUUGAUCGGCUGc--UCGcUCGGGaGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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