miRNA display CGI


Results 1 - 20 of 105 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11027 5' -55.4 NC_002794.1 + 293 0.66 0.959172
Target:  5'- cCUGGCgcGCCGaACGc-CGGGCCCgccCCa -3'
miRNA:   3'- -GAUUGauCGGC-UGCucGCUCGGGa--GG- -5'
11027 5' -55.4 NC_002794.1 + 8106 0.67 0.933748
Target:  5'- uCUAGCgccaCCGAgCGGGCGGcGgCCUCCu -3'
miRNA:   3'- -GAUUGauc-GGCU-GCUCGCU-CgGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 11646 0.74 0.627156
Target:  5'- -cGACgggcGGCCGACGAcGCG-GCCCgCCg -3'
miRNA:   3'- gaUUGa---UCGGCUGCU-CGCuCGGGaGG- -5'
11027 5' -55.4 NC_002794.1 + 13812 0.7 0.800951
Target:  5'- -gGGCccGGCCGGCG-GCGAcGgCCUCCu -3'
miRNA:   3'- gaUUGa-UCGGCUGCuCGCU-CgGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 17504 0.66 0.947472
Target:  5'- -cGACgccGGCCGA-GAuCGGcGCCCUCCu -3'
miRNA:   3'- gaUUGa--UCGGCUgCUcGCU-CGGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 18719 0.71 0.755337
Target:  5'- -gGACgucggAGCCGACGAGCc-GCCCcaacgCCa -3'
miRNA:   3'- gaUUGa----UCGGCUGCUCGcuCGGGa----GG- -5'
11027 5' -55.4 NC_002794.1 + 19235 0.66 0.954346
Target:  5'- cCUGAUcugAGCCGAUGAugugccgaccggccGCG-GCCC-CCg -3'
miRNA:   3'- -GAUUGa--UCGGCUGCU--------------CGCuCGGGaGG- -5'
11027 5' -55.4 NC_002794.1 + 19529 0.66 0.947472
Target:  5'- ------cGCCGGCGcGGCGcGGCCCgCCg -3'
miRNA:   3'- gauugauCGGCUGC-UCGC-UCGGGaGG- -5'
11027 5' -55.4 NC_002794.1 + 20533 0.67 0.917953
Target:  5'- -gGACUGGCguucgcgaCGACGGGCGAccggaucccgccGUCgCUCCg -3'
miRNA:   3'- gaUUGAUCG--------GCUGCUCGCU------------CGG-GAGG- -5'
11027 5' -55.4 NC_002794.1 + 22945 0.76 0.489681
Target:  5'- -cGGCUGGCCGACGGGCcGGCgCCguugUCCc -3'
miRNA:   3'- gaUUGAUCGGCUGCUCGcUCG-GG----AGG- -5'
11027 5' -55.4 NC_002794.1 + 23898 0.66 0.949148
Target:  5'- -gGGCccgggAGCCGagugcagcagcguggGCGAGCGAGCgaUCCg -3'
miRNA:   3'- gaUUGa----UCGGC---------------UGCUCGCUCGggAGG- -5'
11027 5' -55.4 NC_002794.1 + 32033 0.67 0.928714
Target:  5'- -cGGCgcuGCCGAUacagcGGCGuGUCCUCCa -3'
miRNA:   3'- gaUUGau-CGGCUGc----UCGCuCGGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 32271 0.67 0.933748
Target:  5'- -cGGCcGGCCGaucgGCGAGCGAcGCCg-CCg -3'
miRNA:   3'- gaUUGaUCGGC----UGCUCGCU-CGGgaGG- -5'
11027 5' -55.4 NC_002794.1 + 32606 0.68 0.906272
Target:  5'- -gGGCcggGGCCGGgGAuCGGGCCCgCCg -3'
miRNA:   3'- gaUUGa--UCGGCUgCUcGCUCGGGaGG- -5'
11027 5' -55.4 NC_002794.1 + 34092 0.7 0.818222
Target:  5'- -gGGC-AGCCGuCGGGCG-GCCCggaCCg -3'
miRNA:   3'- gaUUGaUCGGCuGCUCGCuCGGGa--GG- -5'
11027 5' -55.4 NC_002794.1 + 34634 0.68 0.893683
Target:  5'- cCUGACcgAGCUGACGAGCauGGCCUa-- -3'
miRNA:   3'- -GAUUGa-UCGGCUGCUCGc-UCGGGagg -5'
11027 5' -55.4 NC_002794.1 + 34988 0.69 0.865883
Target:  5'- -aAACUGcGCCGGCu-GCGGGCCCg-- -3'
miRNA:   3'- gaUUGAU-CGGCUGcuCGCUCGGGagg -5'
11027 5' -55.4 NC_002794.1 + 36106 0.66 0.959172
Target:  5'- uUGACcgAGCCGAUGAGauccCGGaucGCCCgCCg -3'
miRNA:   3'- gAUUGa-UCGGCUGCUC----GCU---CGGGaGG- -5'
11027 5' -55.4 NC_002794.1 + 38450 0.7 0.800071
Target:  5'- aCUGAggAGCCGGCGcggccgcGGCGcGCCCUUUa -3'
miRNA:   3'- -GAUUgaUCGGCUGC-------UCGCuCGGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 41739 0.72 0.736296
Target:  5'- uUGAuCUcGCaGAUGAGCGAGCCCgcuUCCa -3'
miRNA:   3'- gAUU-GAuCGgCUGCUCGCUCGGG---AGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.