miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11027 5' -55.4 NC_002794.1 + 42602 0.72 0.707099
Target:  5'- -cGGC-GGCCGG-GAGCGGGCUCUCUc -3'
miRNA:   3'- gaUUGaUCGGCUgCUCGCUCGGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 43519 0.69 0.873151
Target:  5'- -aAGCgcGCCGguaGCucGCGAGCCCgUCCa -3'
miRNA:   3'- gaUUGauCGGC---UGcuCGCUCGGG-AGG- -5'
11027 5' -55.4 NC_002794.1 + 43651 0.7 0.834839
Target:  5'- --cGCUGccGCCGaACGAGcCGGGCUCUCg -3'
miRNA:   3'- gauUGAU--CGGC-UGCUC-GCUCGGGAGg -5'
11027 5' -55.4 NC_002794.1 + 47367 0.69 0.850744
Target:  5'- --cGCUcaAGCCGAggcCGAGCccGAGCCCgagCCc -3'
miRNA:   3'- gauUGA--UCGGCU---GCUCG--CUCGGGa--GG- -5'
11027 5' -55.4 NC_002794.1 + 49730 0.71 0.773959
Target:  5'- -gAGCcAGaCCGugGuGGCGAGCCCguaggCCg -3'
miRNA:   3'- gaUUGaUC-GGCugC-UCGCUCGGGa----GG- -5'
11027 5' -55.4 NC_002794.1 + 49936 0.66 0.947472
Target:  5'- -aAACaAGUgGACGGGCaGGCgCUCCc -3'
miRNA:   3'- gaUUGaUCGgCUGCUCGcUCGgGAGG- -5'
11027 5' -55.4 NC_002794.1 + 51383 0.69 0.873151
Target:  5'- -----cGGCCGGCGAcaGGcGCCCUCCg -3'
miRNA:   3'- gauugaUCGGCUGCUcgCU-CGGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 53274 0.7 0.818222
Target:  5'- -cAACgGGgCGGCGAGCGA-CCaCUCCa -3'
miRNA:   3'- gaUUGaUCgGCUGCUCGCUcGG-GAGG- -5'
11027 5' -55.4 NC_002794.1 + 55982 0.72 0.687313
Target:  5'- aUGGCgUAGCCG-CGGGCGAGCaCCagCa -3'
miRNA:   3'- gAUUG-AUCGGCuGCUCGCUCG-GGagG- -5'
11027 5' -55.4 NC_002794.1 + 57937 0.68 0.887055
Target:  5'- -cGACUucGCCGACGcgcuGCGcAGCCUgugCCa -3'
miRNA:   3'- gaUUGAu-CGGCUGCu---CGC-UCGGGa--GG- -5'
11027 5' -55.4 NC_002794.1 + 57982 0.66 0.943126
Target:  5'- -cGACggcgAGCCGACGcGCcAGgCCUUCg -3'
miRNA:   3'- gaUUGa---UCGGCUGCuCGcUCgGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 58589 0.66 0.955492
Target:  5'- --cACcAGCgCGGCGGGCuGGCCUUCg -3'
miRNA:   3'- gauUGaUCG-GCUGCUCGcUCGGGAGg -5'
11027 5' -55.4 NC_002794.1 + 58649 0.66 0.955492
Target:  5'- -cAGCUGGgCGACGGGCugcugcAGCCggCCg -3'
miRNA:   3'- gaUUGAUCgGCUGCUCGc-----UCGGgaGG- -5'
11027 5' -55.4 NC_002794.1 + 59214 0.68 0.893683
Target:  5'- -cGGCgucucGGCCGcgGCGcGCGAGCUCUUCg -3'
miRNA:   3'- gaUUGa----UCGGC--UGCuCGCUCGGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 60222 0.73 0.667349
Target:  5'- --cGCgacGCCGcCGAGCGcGCCCUCUa -3'
miRNA:   3'- gauUGau-CGGCuGCUCGCuCGGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 62494 0.67 0.938552
Target:  5'- -cGAgUGGaCGGCGGGCGgcgccgccGGCgCCUCCg -3'
miRNA:   3'- gaUUgAUCgGCUGCUCGC--------UCG-GGAGG- -5'
11027 5' -55.4 NC_002794.1 + 63934 0.68 0.880209
Target:  5'- -----cGGCCGGCGAGUcucGAGUCCgacgCCu -3'
miRNA:   3'- gauugaUCGGCUGCUCG---CUCGGGa---GG- -5'
11027 5' -55.4 NC_002794.1 + 66502 0.73 0.647276
Target:  5'- gUAACUGaUCGGCGAGCGAuagGCCgUCCc -3'
miRNA:   3'- gAUUGAUcGGCUGCUCGCU---CGGgAGG- -5'
11027 5' -55.4 NC_002794.1 + 69588 0.66 0.959172
Target:  5'- --cGCgcGUCgGACGAGCGGGaggccgCCUCCa -3'
miRNA:   3'- gauUGauCGG-CUGCUCGCUCg-----GGAGG- -5'
11027 5' -55.4 NC_002794.1 + 70542 0.66 0.943126
Target:  5'- -cAGC-AGCCGAuCGuGCgccucGAGCCgCUCCa -3'
miRNA:   3'- gaUUGaUCGGCU-GCuCG-----CUCGG-GAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.