miRNA display CGI


Results 41 - 60 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11027 5' -55.4 NC_002794.1 + 72876 0.67 0.933748
Target:  5'- -cGACUccucGGCCGGgucGCG-GCCCUCCu -3'
miRNA:   3'- gaUUGA----UCGGCUgcuCGCuCGGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 75379 0.68 0.893683
Target:  5'- -----cGGCCGGCG-GCGgcGGCCuCUCCc -3'
miRNA:   3'- gauugaUCGGCUGCuCGC--UCGG-GAGG- -5'
11027 5' -55.4 NC_002794.1 + 76832 0.66 0.962637
Target:  5'- -cAGC-GGCCGGCGAuGCGcGCCggCCu -3'
miRNA:   3'- gaUUGaUCGGCUGCU-CGCuCGGgaGG- -5'
11027 5' -55.4 NC_002794.1 + 77398 0.68 0.900089
Target:  5'- aCUAcCUGGCCGuCG-GCGAGaUCCUgCa -3'
miRNA:   3'- -GAUuGAUCGGCuGCuCGCUC-GGGAgG- -5'
11027 5' -55.4 NC_002794.1 + 82495 0.66 0.959172
Target:  5'- -cGGCccGCCgcGACGcGCGAGaCCUUCCa -3'
miRNA:   3'- gaUUGauCGG--CUGCuCGCUC-GGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 84284 0.66 0.943126
Target:  5'- -cAGCU-GCCGACgggGAGCGgcGGCgCUUCCu -3'
miRNA:   3'- gaUUGAuCGGCUG---CUCGC--UCG-GGAGG- -5'
11027 5' -55.4 NC_002794.1 + 84755 0.71 0.78309
Target:  5'- -cGACcGGCCG-CGAGaGGGCCgUCCg -3'
miRNA:   3'- gaUUGaUCGGCuGCUCgCUCGGgAGG- -5'
11027 5' -55.4 NC_002794.1 + 92226 0.74 0.597021
Target:  5'- --cGCUAcGCCGGCGAcGCcaagGAGCCCUCg -3'
miRNA:   3'- gauUGAU-CGGCUGCU-CG----CUCGGGAGg -5'
11027 5' -55.4 NC_002794.1 + 94014 0.7 0.809664
Target:  5'- -cGGCgGGCCGGCGgguuccgccGGCGGGCCCg-- -3'
miRNA:   3'- gaUUGaUCGGCUGC---------UCGCUCGGGagg -5'
11027 5' -55.4 NC_002794.1 + 95848 0.66 0.951593
Target:  5'- -cGGCcggggAGgCGGCGGGCGGGCCgUUUCa -3'
miRNA:   3'- gaUUGa----UCgGCUGCUCGCUCGG-GAGG- -5'
11027 5' -55.4 NC_002794.1 + 99543 0.66 0.958814
Target:  5'- --uGCgGGCCG-CGGaaaccgcGCGcGCCCUCCg -3'
miRNA:   3'- gauUGaUCGGCuGCU-------CGCuCGGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 99752 0.66 0.947472
Target:  5'- cCUGGuCUGGCCGACGuuGCcgccGCCCgcggugCCg -3'
miRNA:   3'- -GAUU-GAUCGGCUGCu-CGcu--CGGGa-----GG- -5'
11027 5' -55.4 NC_002794.1 + 101643 0.71 0.745865
Target:  5'- -gAGCgugGGCgGGCGGGCGgcgguuAGCCCgUCCg -3'
miRNA:   3'- gaUUGa--UCGgCUGCUCGC------UCGGG-AGG- -5'
11027 5' -55.4 NC_002794.1 + 101681 0.73 0.677349
Target:  5'- ------cGCCGGCGGagcGCGAGCCCgagCCg -3'
miRNA:   3'- gauugauCGGCUGCU---CGCUCGGGa--GG- -5'
11027 5' -55.4 NC_002794.1 + 102080 0.67 0.928714
Target:  5'- cCUGccGCgGGCCGACGAGCcgccGCCCa-- -3'
miRNA:   3'- -GAU--UGaUCGGCUGCUCGcu--CGGGagg -5'
11027 5' -55.4 NC_002794.1 + 104440 0.67 0.917953
Target:  5'- -gGACgccGCCG-CGGGCG-GCCCgagCCc -3'
miRNA:   3'- gaUUGau-CGGCuGCUCGCuCGGGa--GG- -5'
11027 5' -55.4 NC_002794.1 + 109182 0.73 0.677349
Target:  5'- gUAGC-GGCgGAgGcAGCGGGUCCUCCa -3'
miRNA:   3'- gAUUGaUCGgCUgC-UCGCUCGGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 109687 0.7 0.818222
Target:  5'- -cAGCUAGCCGACcccGGUcAGCCCgCCc -3'
miRNA:   3'- gaUUGAUCGGCUGc--UCGcUCGGGaGG- -5'
11027 5' -55.4 NC_002794.1 + 110448 0.7 0.818222
Target:  5'- gUGGCggaGGCCGGCGAGCcGGCUCgUCg -3'
miRNA:   3'- gAUUGa--UCGGCUGCUCGcUCGGG-AGg -5'
11027 5' -55.4 NC_002794.1 + 113162 0.66 0.958091
Target:  5'- -cGugUAGCgCGcGCGGGCGgcggcggucgcggaGGCgCCUCCg -3'
miRNA:   3'- gaUugAUCG-GC-UGCUCGC--------------UCG-GGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.