Results 61 - 80 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11027 | 5' | -55.4 | NC_002794.1 | + | 113665 | 0.7 | 0.818222 |
Target: 5'- -cGGCguccAGCgCGGCGAGCaGGCCCgCCa -3' miRNA: 3'- gaUUGa---UCG-GCUGCUCGcUCGGGaGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 114180 | 0.66 | 0.951593 |
Target: 5'- gCUggUUGGCCaGGCGcAGCGGcGCCacggCCg -3' miRNA: 3'- -GAuuGAUCGG-CUGC-UCGCU-CGGga--GG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 115047 | 0.69 | 0.865883 |
Target: 5'- -cGACcGGgCGGCGGGCGGcagcGCCgUCCa -3' miRNA: 3'- gaUUGaUCgGCUGCUCGCU----CGGgAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 115195 | 0.68 | 0.906272 |
Target: 5'- -cGGCggucgAGCCGGCGuAGCGccuccGCCUUCUg -3' miRNA: 3'- gaUUGa----UCGGCUGC-UCGCu----CGGGAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 115926 | 0.68 | 0.880209 |
Target: 5'- uUGGCgcGgCGGCGGGCcGGCCCgCCg -3' miRNA: 3'- gAUUGauCgGCUGCUCGcUCGGGaGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 118035 | 0.68 | 0.900089 |
Target: 5'- -cAGCUccAGCaGGCGAGCGuGGCCCgUCUc -3' miRNA: 3'- gaUUGA--UCGgCUGCUCGC-UCGGG-AGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 119235 | 0.68 | 0.893683 |
Target: 5'- -aGGC-GGUCGAgGAGCGuGUCCUCg -3' miRNA: 3'- gaUUGaUCGGCUgCUCGCuCGGGAGg -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 121943 | 0.67 | 0.928714 |
Target: 5'- -cGACgcGCUGAuCGAGCGccuggAGCgCUCCg -3' miRNA: 3'- gaUUGauCGGCU-GCUCGC-----UCGgGAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 124903 | 0.71 | 0.78309 |
Target: 5'- -gAGCUGGUCcGCGAgaccgGCGAGUCCUCg -3' miRNA: 3'- gaUUGAUCGGcUGCU-----CGCUCGGGAGg -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 125755 | 0.68 | 0.90444 |
Target: 5'- -gGACggcGGCCGGCGGcucgccacccggcuGCGAGCgCUCa -3' miRNA: 3'- gaUUGa--UCGGCUGCU--------------CGCUCGgGAGg -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 126429 | 0.69 | 0.865883 |
Target: 5'- --uGCUGGUCGAgGuGUGGGCgCCUCg -3' miRNA: 3'- gauUGAUCGGCUgCuCGCUCG-GGAGg -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 127798 | 0.66 | 0.943126 |
Target: 5'- -cGGCUccgAGUCGAcgcCGAGCGAGCgC-CCg -3' miRNA: 3'- gaUUGA---UCGGCU---GCUCGCUCGgGaGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 135481 | 0.66 | 0.959172 |
Target: 5'- -cGACgccGCCGuCGAcgcgcGCGGGCCCgaugCCc -3' miRNA: 3'- gaUUGau-CGGCuGCU-----CGCUCGGGa---GG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 136760 | 0.66 | 0.959172 |
Target: 5'- -gAGCUGGCgGACGcGCGccacGCCCagcucgaggaUCCg -3' miRNA: 3'- gaUUGAUCGgCUGCuCGCu---CGGG----------AGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 137637 | 0.66 | 0.959172 |
Target: 5'- -cGACgucCUGGCGGGCGccGGgCCUCCg -3' miRNA: 3'- gaUUGaucGGCUGCUCGC--UCgGGAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 138729 | 0.69 | 0.858413 |
Target: 5'- -gAGCcGGCuCGACGGGguccccGGCCCUCCg -3' miRNA: 3'- gaUUGaUCG-GCUGCUCgc----UCGGGAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 141773 | 0.66 | 0.947472 |
Target: 5'- -cGAUU--CCGACGA-CGAGCCgUCCg -3' miRNA: 3'- gaUUGAucGGCUGCUcGCUCGGgAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 142578 | 0.67 | 0.933748 |
Target: 5'- -gAGC-AGCgCGAUGGGCGcGCCCUg- -3' miRNA: 3'- gaUUGaUCG-GCUGCUCGCuCGGGAgg -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 144774 | 0.67 | 0.938552 |
Target: 5'- -cAGCUGGCCGGCGucgccGCuGGCUuCUCUg -3' miRNA: 3'- gaUUGAUCGGCUGCu----CGcUCGG-GAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 145192 | 0.67 | 0.917953 |
Target: 5'- ----aUGGUCGcCGcGGCG-GCCCUCCg -3' miRNA: 3'- gauugAUCGGCuGC-UCGCuCGGGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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