Results 81 - 100 of 105 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11027 | 5' | -55.4 | NC_002794.1 | + | 145333 | 0.67 | 0.933748 |
Target: 5'- -cGGCgcucgGGCC--CGAGCGGGCCCgagCUg -3' miRNA: 3'- gaUUGa----UCGGcuGCUCGCUCGGGa--GG- -5' |
|||||||
11027 | 5' | -55.4 | NC_002794.1 | + | 145573 | 0.67 | 0.923449 |
Target: 5'- -gGACgagcGCCGACgGAGCGgcGGCCggCUCCc -3' miRNA: 3'- gaUUGau--CGGCUG-CUCGC--UCGG--GAGG- -5' |
|||||||
11027 | 5' | -55.4 | NC_002794.1 | + | 145893 | 0.67 | 0.938552 |
Target: 5'- -aAGCggcgAGCgCGACGGGgGAGUCgaCCg -3' miRNA: 3'- gaUUGa---UCG-GCUGCUCgCUCGGgaGG- -5' |
|||||||
11027 | 5' | -55.4 | NC_002794.1 | + | 147493 | 0.66 | 0.951593 |
Target: 5'- -gAGCUGGCCGA-GAGCuucaccGAGuUCCUCg -3' miRNA: 3'- gaUUGAUCGGCUgCUCG------CUC-GGGAGg -5' |
|||||||
11027 | 5' | -55.4 | NC_002794.1 | + | 149215 | 0.66 | 0.943126 |
Target: 5'- -cGGCUGGCCGGa-AGCGAGgCgCCgCCg -3' miRNA: 3'- gaUUGAUCGGCUgcUCGCUC-G-GGaGG- -5' |
|||||||
11027 | 5' | -55.4 | NC_002794.1 | + | 149690 | 0.72 | 0.725669 |
Target: 5'- -cGACUGGCCGcgggggccgccugGCGGGUGGGCCg-CCu -3' miRNA: 3'- gaUUGAUCGGC-------------UGCUCGCUCGGgaGG- -5' |
|||||||
11027 | 5' | -55.4 | NC_002794.1 | + | 150056 | 0.66 | 0.951593 |
Target: 5'- -cGACUgcGGUgGgACGAGCGcgcucuGGCCUUCCu -3' miRNA: 3'- gaUUGA--UCGgC-UGCUCGC------UCGGGAGG- -5' |
|||||||
11027 | 5' | -55.4 | NC_002794.1 | + | 153018 | 0.7 | 0.817373 |
Target: 5'- -gGACUGGgCGACGGggacgggaacgacGCGGGuCCCUCg -3' miRNA: 3'- gaUUGAUCgGCUGCU-------------CGCUC-GGGAGg -5' |
|||||||
11027 | 5' | -55.4 | NC_002794.1 | + | 156420 | 0.66 | 0.951593 |
Target: 5'- -cGGCcacGGCCGGCGGGUGAGagaCCggucgcgCCg -3' miRNA: 3'- gaUUGa--UCGGCUGCUCGCUCg--GGa------GG- -5' |
|||||||
11027 | 5' | -55.4 | NC_002794.1 | + | 172142 | 0.66 | 0.947472 |
Target: 5'- aUAACUGGCCGGUGGGUGAGUg---- -3' miRNA: 3'- gAUUGAUCGGCUGCUCGCUCGggagg -5' |
|||||||
11027 | 5' | -55.4 | NC_002794.1 | + | 177771 | 0.67 | 0.938552 |
Target: 5'- -gGACaAGCgGGCGuauGGCGGGCcgucauCCUCCa -3' miRNA: 3'- gaUUGaUCGgCUGC---UCGCUCG------GGAGG- -5' |
|||||||
11027 | 5' | -55.4 | NC_002794.1 | + | 179989 | 0.7 | 0.818222 |
Target: 5'- -aGGCggUGGCCG-CGAcgGCGGGCCCggCCa -3' miRNA: 3'- gaUUG--AUCGGCuGCU--CGCUCGGGa-GG- -5' |
|||||||
11027 | 5' | -55.4 | NC_002794.1 | + | 181227 | 0.66 | 0.962637 |
Target: 5'- -cGACgagauCCGGCGAcgGCGcGCCUUCCa -3' miRNA: 3'- gaUUGauc--GGCUGCU--CGCuCGGGAGG- -5' |
|||||||
11027 | 5' | -55.4 | NC_002794.1 | + | 182262 | 0.66 | 0.947472 |
Target: 5'- -cAGCgcGCCGAguccCGAGCG-GCCUcCCa -3' miRNA: 3'- gaUUGauCGGCU----GCUCGCuCGGGaGG- -5' |
|||||||
11027 | 5' | -55.4 | NC_002794.1 | + | 182348 | 0.66 | 0.962637 |
Target: 5'- -gGACgGGCgGGCGGGUGAccgggcgcacgGCCCcCCg -3' miRNA: 3'- gaUUGaUCGgCUGCUCGCU-----------CGGGaGG- -5' |
|||||||
11027 | 5' | -55.4 | NC_002794.1 | + | 182952 | 0.7 | 0.79209 |
Target: 5'- -gGGCUcgAGCCGACG-GCG-GCCggCUCCu -3' miRNA: 3'- gaUUGA--UCGGCUGCuCGCuCGG--GAGG- -5' |
|||||||
11027 | 5' | -55.4 | NC_002794.1 | + | 183679 | 0.69 | 0.873151 |
Target: 5'- ------cGCCGACGGGuCGAGCgCCcgCCg -3' miRNA: 3'- gauugauCGGCUGCUC-GCUCG-GGa-GG- -5' |
|||||||
11027 | 5' | -55.4 | NC_002794.1 | + | 185267 | 0.68 | 0.880209 |
Target: 5'- -gGACgccGCCGGcCGAGUGGGCCg-CCg -3' miRNA: 3'- gaUUGau-CGGCU-GCUCGCUCGGgaGG- -5' |
|||||||
11027 | 5' | -55.4 | NC_002794.1 | + | 185364 | 0.69 | 0.850744 |
Target: 5'- -gAGCgGGCCGaacgccGCGAGCGAGgCCagCCa -3' miRNA: 3'- gaUUGaUCGGC------UGCUCGCUCgGGa-GG- -5' |
|||||||
11027 | 5' | -55.4 | NC_002794.1 | + | 189324 | 0.68 | 0.912227 |
Target: 5'- -cAGCUGGUCGGgGGGC-AGCagCUCCa -3' miRNA: 3'- gaUUGAUCGGCUgCUCGcUCGg-GAGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home