miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11027 5' -55.4 NC_002794.1 + 194140 0.67 0.923449
Target:  5'- -cAGC-GGCCGcagcaGCGcccGCGAGCCCUgCCg -3'
miRNA:   3'- gaUUGaUCGGC-----UGCu--CGCUCGGGA-GG- -5'
11027 5' -55.4 NC_002794.1 + 192957 0.69 0.871714
Target:  5'- -aGACaGGCCGACGAGCcgugcagGAccagggcgcggucGCCCUCg -3'
miRNA:   3'- gaUUGaUCGGCUGCUCG-------CU-------------CGGGAGg -5'
11027 5' -55.4 NC_002794.1 + 191931 0.72 0.736296
Target:  5'- -aGACgagAGgaUCGGCG-GCGAGUCCUCCg -3'
miRNA:   3'- gaUUGa--UC--GGCUGCuCGCUCGGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 190154 0.66 0.947472
Target:  5'- --uACU-GCUGGCG-GCG-GCUCUCCu -3'
miRNA:   3'- gauUGAuCGGCUGCuCGCuCGGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 189651 0.79 0.337122
Target:  5'- gCUGACUAGCCGGCuggccGAGCGGucGCCCcggCCg -3'
miRNA:   3'- -GAUUGAUCGGCUG-----CUCGCU--CGGGa--GG- -5'
11027 5' -55.4 NC_002794.1 + 189324 0.68 0.912227
Target:  5'- -cAGCUGGUCGGgGGGC-AGCagCUCCa -3'
miRNA:   3'- gaUUGAUCGGCUgCUCGcUCGg-GAGG- -5'
11027 5' -55.4 NC_002794.1 + 185364 0.69 0.850744
Target:  5'- -gAGCgGGCCGaacgccGCGAGCGAGgCCagCCa -3'
miRNA:   3'- gaUUGaUCGGC------UGCUCGCUCgGGa-GG- -5'
11027 5' -55.4 NC_002794.1 + 185267 0.68 0.880209
Target:  5'- -gGACgccGCCGGcCGAGUGGGCCg-CCg -3'
miRNA:   3'- gaUUGau-CGGCU-GCUCGCUCGGgaGG- -5'
11027 5' -55.4 NC_002794.1 + 183679 0.69 0.873151
Target:  5'- ------cGCCGACGGGuCGAGCgCCcgCCg -3'
miRNA:   3'- gauugauCGGCUGCUC-GCUCG-GGa-GG- -5'
11027 5' -55.4 NC_002794.1 + 182952 0.7 0.79209
Target:  5'- -gGGCUcgAGCCGACG-GCG-GCCggCUCCu -3'
miRNA:   3'- gaUUGA--UCGGCUGCuCGCuCGG--GAGG- -5'
11027 5' -55.4 NC_002794.1 + 182348 0.66 0.962637
Target:  5'- -gGACgGGCgGGCGGGUGAccgggcgcacgGCCCcCCg -3'
miRNA:   3'- gaUUGaUCGgCUGCUCGCU-----------CGGGaGG- -5'
11027 5' -55.4 NC_002794.1 + 182262 0.66 0.947472
Target:  5'- -cAGCgcGCCGAguccCGAGCG-GCCUcCCa -3'
miRNA:   3'- gaUUGauCGGCU----GCUCGCuCGGGaGG- -5'
11027 5' -55.4 NC_002794.1 + 181227 0.66 0.962637
Target:  5'- -cGACgagauCCGGCGAcgGCGcGCCUUCCa -3'
miRNA:   3'- gaUUGauc--GGCUGCU--CGCuCGGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 179989 0.7 0.818222
Target:  5'- -aGGCggUGGCCG-CGAcgGCGGGCCCggCCa -3'
miRNA:   3'- gaUUG--AUCGGCuGCU--CGCUCGGGa-GG- -5'
11027 5' -55.4 NC_002794.1 + 177771 0.67 0.938552
Target:  5'- -gGACaAGCgGGCGuauGGCGGGCcgucauCCUCCa -3'
miRNA:   3'- gaUUGaUCGgCUGC---UCGCUCG------GGAGG- -5'
11027 5' -55.4 NC_002794.1 + 172142 0.66 0.947472
Target:  5'- aUAACUGGCCGGUGGGUGAGUg---- -3'
miRNA:   3'- gAUUGAUCGGCUGCUCGCUCGggagg -5'
11027 5' -55.4 NC_002794.1 + 156420 0.66 0.951593
Target:  5'- -cGGCcacGGCCGGCGGGUGAGagaCCggucgcgCCg -3'
miRNA:   3'- gaUUGa--UCGGCUGCUCGCUCg--GGa------GG- -5'
11027 5' -55.4 NC_002794.1 + 153018 0.7 0.817373
Target:  5'- -gGACUGGgCGACGGggacgggaacgacGCGGGuCCCUCg -3'
miRNA:   3'- gaUUGAUCgGCUGCU-------------CGCUC-GGGAGg -5'
11027 5' -55.4 NC_002794.1 + 150056 0.66 0.951593
Target:  5'- -cGACUgcGGUgGgACGAGCGcgcucuGGCCUUCCu -3'
miRNA:   3'- gaUUGA--UCGgC-UGCUCGC------UCGGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 149690 0.72 0.725669
Target:  5'- -cGACUGGCCGcgggggccgccugGCGGGUGGGCCg-CCu -3'
miRNA:   3'- gaUUGAUCGGC-------------UGCUCGCUCGGgaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.