miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11027 5' -55.4 NC_002794.1 + 149215 0.66 0.943126
Target:  5'- -cGGCUGGCCGGa-AGCGAGgCgCCgCCg -3'
miRNA:   3'- gaUUGAUCGGCUgcUCGCUC-G-GGaGG- -5'
11027 5' -55.4 NC_002794.1 + 147493 0.66 0.951593
Target:  5'- -gAGCUGGCCGA-GAGCuucaccGAGuUCCUCg -3'
miRNA:   3'- gaUUGAUCGGCUgCUCG------CUC-GGGAGg -5'
11027 5' -55.4 NC_002794.1 + 145893 0.67 0.938552
Target:  5'- -aAGCggcgAGCgCGACGGGgGAGUCgaCCg -3'
miRNA:   3'- gaUUGa---UCG-GCUGCUCgCUCGGgaGG- -5'
11027 5' -55.4 NC_002794.1 + 145573 0.67 0.923449
Target:  5'- -gGACgagcGCCGACgGAGCGgcGGCCggCUCCc -3'
miRNA:   3'- gaUUGau--CGGCUG-CUCGC--UCGG--GAGG- -5'
11027 5' -55.4 NC_002794.1 + 145333 0.67 0.933748
Target:  5'- -cGGCgcucgGGCC--CGAGCGGGCCCgagCUg -3'
miRNA:   3'- gaUUGa----UCGGcuGCUCGCUCGGGa--GG- -5'
11027 5' -55.4 NC_002794.1 + 145192 0.67 0.917953
Target:  5'- ----aUGGUCGcCGcGGCG-GCCCUCCg -3'
miRNA:   3'- gauugAUCGGCuGC-UCGCuCGGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 144774 0.67 0.938552
Target:  5'- -cAGCUGGCCGGCGucgccGCuGGCUuCUCUg -3'
miRNA:   3'- gaUUGAUCGGCUGCu----CGcUCGG-GAGG- -5'
11027 5' -55.4 NC_002794.1 + 142578 0.67 0.933748
Target:  5'- -gAGC-AGCgCGAUGGGCGcGCCCUg- -3'
miRNA:   3'- gaUUGaUCG-GCUGCUCGCuCGGGAgg -5'
11027 5' -55.4 NC_002794.1 + 141773 0.66 0.947472
Target:  5'- -cGAUU--CCGACGA-CGAGCCgUCCg -3'
miRNA:   3'- gaUUGAucGGCUGCUcGCUCGGgAGG- -5'
11027 5' -55.4 NC_002794.1 + 138729 0.69 0.858413
Target:  5'- -gAGCcGGCuCGACGGGguccccGGCCCUCCg -3'
miRNA:   3'- gaUUGaUCG-GCUGCUCgc----UCGGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 137637 0.66 0.959172
Target:  5'- -cGACgucCUGGCGGGCGccGGgCCUCCg -3'
miRNA:   3'- gaUUGaucGGCUGCUCGC--UCgGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 136760 0.66 0.959172
Target:  5'- -gAGCUGGCgGACGcGCGccacGCCCagcucgaggaUCCg -3'
miRNA:   3'- gaUUGAUCGgCUGCuCGCu---CGGG----------AGG- -5'
11027 5' -55.4 NC_002794.1 + 135481 0.66 0.959172
Target:  5'- -cGACgccGCCGuCGAcgcgcGCGGGCCCgaugCCc -3'
miRNA:   3'- gaUUGau-CGGCuGCU-----CGCUCGGGa---GG- -5'
11027 5' -55.4 NC_002794.1 + 127798 0.66 0.943126
Target:  5'- -cGGCUccgAGUCGAcgcCGAGCGAGCgC-CCg -3'
miRNA:   3'- gaUUGA---UCGGCU---GCUCGCUCGgGaGG- -5'
11027 5' -55.4 NC_002794.1 + 126429 0.69 0.865883
Target:  5'- --uGCUGGUCGAgGuGUGGGCgCCUCg -3'
miRNA:   3'- gauUGAUCGGCUgCuCGCUCG-GGAGg -5'
11027 5' -55.4 NC_002794.1 + 125755 0.68 0.90444
Target:  5'- -gGACggcGGCCGGCGGcucgccacccggcuGCGAGCgCUCa -3'
miRNA:   3'- gaUUGa--UCGGCUGCU--------------CGCUCGgGAGg -5'
11027 5' -55.4 NC_002794.1 + 124903 0.71 0.78309
Target:  5'- -gAGCUGGUCcGCGAgaccgGCGAGUCCUCg -3'
miRNA:   3'- gaUUGAUCGGcUGCU-----CGCUCGGGAGg -5'
11027 5' -55.4 NC_002794.1 + 121943 0.67 0.928714
Target:  5'- -cGACgcGCUGAuCGAGCGccuggAGCgCUCCg -3'
miRNA:   3'- gaUUGauCGGCU-GCUCGC-----UCGgGAGG- -5'
11027 5' -55.4 NC_002794.1 + 119235 0.68 0.893683
Target:  5'- -aGGC-GGUCGAgGAGCGuGUCCUCg -3'
miRNA:   3'- gaUUGaUCGGCUgCUCGCuCGGGAGg -5'
11027 5' -55.4 NC_002794.1 + 118035 0.68 0.900089
Target:  5'- -cAGCUccAGCaGGCGAGCGuGGCCCgUCUc -3'
miRNA:   3'- gaUUGA--UCGgCUGCUCGC-UCGGG-AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.