Results 41 - 60 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11027 | 5' | -55.4 | NC_002794.1 | + | 115926 | 0.68 | 0.880209 |
Target: 5'- uUGGCgcGgCGGCGGGCcGGCCCgCCg -3' miRNA: 3'- gAUUGauCgGCUGCUCGcUCGGGaGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 115195 | 0.68 | 0.906272 |
Target: 5'- -cGGCggucgAGCCGGCGuAGCGccuccGCCUUCUg -3' miRNA: 3'- gaUUGa----UCGGCUGC-UCGCu----CGGGAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 115047 | 0.69 | 0.865883 |
Target: 5'- -cGACcGGgCGGCGGGCGGcagcGCCgUCCa -3' miRNA: 3'- gaUUGaUCgGCUGCUCGCU----CGGgAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 114180 | 0.66 | 0.951593 |
Target: 5'- gCUggUUGGCCaGGCGcAGCGGcGCCacggCCg -3' miRNA: 3'- -GAuuGAUCGG-CUGC-UCGCU-CGGga--GG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 113665 | 0.7 | 0.818222 |
Target: 5'- -cGGCguccAGCgCGGCGAGCaGGCCCgCCa -3' miRNA: 3'- gaUUGa---UCG-GCUGCUCGcUCGGGaGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 113162 | 0.66 | 0.958091 |
Target: 5'- -cGugUAGCgCGcGCGGGCGgcggcggucgcggaGGCgCCUCCg -3' miRNA: 3'- gaUugAUCG-GC-UGCUCGC--------------UCG-GGAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 110448 | 0.7 | 0.818222 |
Target: 5'- gUGGCggaGGCCGGCGAGCcGGCUCgUCg -3' miRNA: 3'- gAUUGa--UCGGCUGCUCGcUCGGG-AGg -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 109687 | 0.7 | 0.818222 |
Target: 5'- -cAGCUAGCCGACcccGGUcAGCCCgCCc -3' miRNA: 3'- gaUUGAUCGGCUGc--UCGcUCGGGaGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 109182 | 0.73 | 0.677349 |
Target: 5'- gUAGC-GGCgGAgGcAGCGGGUCCUCCa -3' miRNA: 3'- gAUUGaUCGgCUgC-UCGCUCGGGAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 104440 | 0.67 | 0.917953 |
Target: 5'- -gGACgccGCCG-CGGGCG-GCCCgagCCc -3' miRNA: 3'- gaUUGau-CGGCuGCUCGCuCGGGa--GG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 102080 | 0.67 | 0.928714 |
Target: 5'- cCUGccGCgGGCCGACGAGCcgccGCCCa-- -3' miRNA: 3'- -GAU--UGaUCGGCUGCUCGcu--CGGGagg -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 101681 | 0.73 | 0.677349 |
Target: 5'- ------cGCCGGCGGagcGCGAGCCCgagCCg -3' miRNA: 3'- gauugauCGGCUGCU---CGCUCGGGa--GG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 101643 | 0.71 | 0.745865 |
Target: 5'- -gAGCgugGGCgGGCGGGCGgcgguuAGCCCgUCCg -3' miRNA: 3'- gaUUGa--UCGgCUGCUCGC------UCGGG-AGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 99752 | 0.66 | 0.947472 |
Target: 5'- cCUGGuCUGGCCGACGuuGCcgccGCCCgcggugCCg -3' miRNA: 3'- -GAUU-GAUCGGCUGCu-CGcu--CGGGa-----GG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 99543 | 0.66 | 0.958814 |
Target: 5'- --uGCgGGCCG-CGGaaaccgcGCGcGCCCUCCg -3' miRNA: 3'- gauUGaUCGGCuGCU-------CGCuCGGGAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 95848 | 0.66 | 0.951593 |
Target: 5'- -cGGCcggggAGgCGGCGGGCGGGCCgUUUCa -3' miRNA: 3'- gaUUGa----UCgGCUGCUCGCUCGG-GAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 94014 | 0.7 | 0.809664 |
Target: 5'- -cGGCgGGCCGGCGgguuccgccGGCGGGCCCg-- -3' miRNA: 3'- gaUUGaUCGGCUGC---------UCGCUCGGGagg -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 92226 | 0.74 | 0.597021 |
Target: 5'- --cGCUAcGCCGGCGAcGCcaagGAGCCCUCg -3' miRNA: 3'- gauUGAU-CGGCUGCU-CG----CUCGGGAGg -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 84755 | 0.71 | 0.78309 |
Target: 5'- -cGACcGGCCG-CGAGaGGGCCgUCCg -3' miRNA: 3'- gaUUGaUCGGCuGCUCgCUCGGgAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 84284 | 0.66 | 0.943126 |
Target: 5'- -cAGCU-GCCGACgggGAGCGgcGGCgCUUCCu -3' miRNA: 3'- gaUUGAuCGGCUG---CUCGC--UCG-GGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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