Results 61 - 80 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11027 | 5' | -55.4 | NC_002794.1 | + | 82495 | 0.66 | 0.959172 |
Target: 5'- -cGGCccGCCgcGACGcGCGAGaCCUUCCa -3' miRNA: 3'- gaUUGauCGG--CUGCuCGCUC-GGGAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 77398 | 0.68 | 0.900089 |
Target: 5'- aCUAcCUGGCCGuCG-GCGAGaUCCUgCa -3' miRNA: 3'- -GAUuGAUCGGCuGCuCGCUC-GGGAgG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 76832 | 0.66 | 0.962637 |
Target: 5'- -cAGC-GGCCGGCGAuGCGcGCCggCCu -3' miRNA: 3'- gaUUGaUCGGCUGCU-CGCuCGGgaGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 75379 | 0.68 | 0.893683 |
Target: 5'- -----cGGCCGGCG-GCGgcGGCCuCUCCc -3' miRNA: 3'- gauugaUCGGCUGCuCGC--UCGG-GAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 72876 | 0.67 | 0.933748 |
Target: 5'- -cGACUccucGGCCGGgucGCG-GCCCUCCu -3' miRNA: 3'- gaUUGA----UCGGCUgcuCGCuCGGGAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 70542 | 0.66 | 0.943126 |
Target: 5'- -cAGC-AGCCGAuCGuGCgccucGAGCCgCUCCa -3' miRNA: 3'- gaUUGaUCGGCU-GCuCG-----CUCGG-GAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 69588 | 0.66 | 0.959172 |
Target: 5'- --cGCgcGUCgGACGAGCGGGaggccgCCUCCa -3' miRNA: 3'- gauUGauCGG-CUGCUCGCUCg-----GGAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 66502 | 0.73 | 0.647276 |
Target: 5'- gUAACUGaUCGGCGAGCGAuagGCCgUCCc -3' miRNA: 3'- gAUUGAUcGGCUGCUCGCU---CGGgAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 63934 | 0.68 | 0.880209 |
Target: 5'- -----cGGCCGGCGAGUcucGAGUCCgacgCCu -3' miRNA: 3'- gauugaUCGGCUGCUCG---CUCGGGa---GG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 62494 | 0.67 | 0.938552 |
Target: 5'- -cGAgUGGaCGGCGGGCGgcgccgccGGCgCCUCCg -3' miRNA: 3'- gaUUgAUCgGCUGCUCGC--------UCG-GGAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 60222 | 0.73 | 0.667349 |
Target: 5'- --cGCgacGCCGcCGAGCGcGCCCUCUa -3' miRNA: 3'- gauUGau-CGGCuGCUCGCuCGGGAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 59214 | 0.68 | 0.893683 |
Target: 5'- -cGGCgucucGGCCGcgGCGcGCGAGCUCUUCg -3' miRNA: 3'- gaUUGa----UCGGC--UGCuCGCUCGGGAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 58649 | 0.66 | 0.955492 |
Target: 5'- -cAGCUGGgCGACGGGCugcugcAGCCggCCg -3' miRNA: 3'- gaUUGAUCgGCUGCUCGc-----UCGGgaGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 58589 | 0.66 | 0.955492 |
Target: 5'- --cACcAGCgCGGCGGGCuGGCCUUCg -3' miRNA: 3'- gauUGaUCG-GCUGCUCGcUCGGGAGg -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 57982 | 0.66 | 0.943126 |
Target: 5'- -cGACggcgAGCCGACGcGCcAGgCCUUCg -3' miRNA: 3'- gaUUGa---UCGGCUGCuCGcUCgGGAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 57937 | 0.68 | 0.887055 |
Target: 5'- -cGACUucGCCGACGcgcuGCGcAGCCUgugCCa -3' miRNA: 3'- gaUUGAu-CGGCUGCu---CGC-UCGGGa--GG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 55982 | 0.72 | 0.687313 |
Target: 5'- aUGGCgUAGCCG-CGGGCGAGCaCCagCa -3' miRNA: 3'- gAUUG-AUCGGCuGCUCGCUCG-GGagG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 53274 | 0.7 | 0.818222 |
Target: 5'- -cAACgGGgCGGCGAGCGA-CCaCUCCa -3' miRNA: 3'- gaUUGaUCgGCUGCUCGCUcGG-GAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 51383 | 0.69 | 0.873151 |
Target: 5'- -----cGGCCGGCGAcaGGcGCCCUCCg -3' miRNA: 3'- gauugaUCGGCUGCUcgCU-CGGGAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 49936 | 0.66 | 0.947472 |
Target: 5'- -aAACaAGUgGACGGGCaGGCgCUCCc -3' miRNA: 3'- gaUUGaUCGgCUGCUCGcUCGgGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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