miRNA display CGI


Results 81 - 100 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11027 5' -55.4 NC_002794.1 + 49730 0.71 0.773959
Target:  5'- -gAGCcAGaCCGugGuGGCGAGCCCguaggCCg -3'
miRNA:   3'- gaUUGaUC-GGCugC-UCGCUCGGGa----GG- -5'
11027 5' -55.4 NC_002794.1 + 47367 0.69 0.850744
Target:  5'- --cGCUcaAGCCGAggcCGAGCccGAGCCCgagCCc -3'
miRNA:   3'- gauUGA--UCGGCU---GCUCG--CUCGGGa--GG- -5'
11027 5' -55.4 NC_002794.1 + 43651 0.7 0.834839
Target:  5'- --cGCUGccGCCGaACGAGcCGGGCUCUCg -3'
miRNA:   3'- gauUGAU--CGGC-UGCUC-GCUCGGGAGg -5'
11027 5' -55.4 NC_002794.1 + 43519 0.69 0.873151
Target:  5'- -aAGCgcGCCGguaGCucGCGAGCCCgUCCa -3'
miRNA:   3'- gaUUGauCGGC---UGcuCGCUCGGG-AGG- -5'
11027 5' -55.4 NC_002794.1 + 42602 0.72 0.707099
Target:  5'- -cGGC-GGCCGG-GAGCGGGCUCUCUc -3'
miRNA:   3'- gaUUGaUCGGCUgCUCGCUCGGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 41739 0.72 0.736296
Target:  5'- uUGAuCUcGCaGAUGAGCGAGCCCgcuUCCa -3'
miRNA:   3'- gAUU-GAuCGgCUGCUCGCUCGGG---AGG- -5'
11027 5' -55.4 NC_002794.1 + 38450 0.7 0.800071
Target:  5'- aCUGAggAGCCGGCGcggccgcGGCGcGCCCUUUa -3'
miRNA:   3'- -GAUUgaUCGGCUGC-------UCGCuCGGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 36106 0.66 0.959172
Target:  5'- uUGACcgAGCCGAUGAGauccCGGaucGCCCgCCg -3'
miRNA:   3'- gAUUGa-UCGGCUGCUC----GCU---CGGGaGG- -5'
11027 5' -55.4 NC_002794.1 + 34988 0.69 0.865883
Target:  5'- -aAACUGcGCCGGCu-GCGGGCCCg-- -3'
miRNA:   3'- gaUUGAU-CGGCUGcuCGCUCGGGagg -5'
11027 5' -55.4 NC_002794.1 + 34634 0.68 0.893683
Target:  5'- cCUGACcgAGCUGACGAGCauGGCCUa-- -3'
miRNA:   3'- -GAUUGa-UCGGCUGCUCGc-UCGGGagg -5'
11027 5' -55.4 NC_002794.1 + 34092 0.7 0.818222
Target:  5'- -gGGC-AGCCGuCGGGCG-GCCCggaCCg -3'
miRNA:   3'- gaUUGaUCGGCuGCUCGCuCGGGa--GG- -5'
11027 5' -55.4 NC_002794.1 + 32606 0.68 0.906272
Target:  5'- -gGGCcggGGCCGGgGAuCGGGCCCgCCg -3'
miRNA:   3'- gaUUGa--UCGGCUgCUcGCUCGGGaGG- -5'
11027 5' -55.4 NC_002794.1 + 32271 0.67 0.933748
Target:  5'- -cGGCcGGCCGaucgGCGAGCGAcGCCg-CCg -3'
miRNA:   3'- gaUUGaUCGGC----UGCUCGCU-CGGgaGG- -5'
11027 5' -55.4 NC_002794.1 + 32033 0.67 0.928714
Target:  5'- -cGGCgcuGCCGAUacagcGGCGuGUCCUCCa -3'
miRNA:   3'- gaUUGau-CGGCUGc----UCGCuCGGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 23898 0.66 0.949148
Target:  5'- -gGGCccgggAGCCGagugcagcagcguggGCGAGCGAGCgaUCCg -3'
miRNA:   3'- gaUUGa----UCGGC---------------UGCUCGCUCGggAGG- -5'
11027 5' -55.4 NC_002794.1 + 22945 0.76 0.489681
Target:  5'- -cGGCUGGCCGACGGGCcGGCgCCguugUCCc -3'
miRNA:   3'- gaUUGAUCGGCUGCUCGcUCG-GG----AGG- -5'
11027 5' -55.4 NC_002794.1 + 20533 0.67 0.917953
Target:  5'- -gGACUGGCguucgcgaCGACGGGCGAccggaucccgccGUCgCUCCg -3'
miRNA:   3'- gaUUGAUCG--------GCUGCUCGCU------------CGG-GAGG- -5'
11027 5' -55.4 NC_002794.1 + 19529 0.66 0.947472
Target:  5'- ------cGCCGGCGcGGCGcGGCCCgCCg -3'
miRNA:   3'- gauugauCGGCUGC-UCGC-UCGGGaGG- -5'
11027 5' -55.4 NC_002794.1 + 19235 0.66 0.954346
Target:  5'- cCUGAUcugAGCCGAUGAugugccgaccggccGCG-GCCC-CCg -3'
miRNA:   3'- -GAUUGa--UCGGCUGCU--------------CGCuCGGGaGG- -5'
11027 5' -55.4 NC_002794.1 + 18719 0.71 0.755337
Target:  5'- -gGACgucggAGCCGACGAGCc-GCCCcaacgCCa -3'
miRNA:   3'- gaUUGa----UCGGCUGCUCGcuCGGGa----GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.