Results 101 - 105 of 105 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11027 | 5' | -55.4 | NC_002794.1 | + | 17504 | 0.66 | 0.947472 |
Target: 5'- -cGACgccGGCCGA-GAuCGGcGCCCUCCu -3' miRNA: 3'- gaUUGa--UCGGCUgCUcGCU-CGGGAGG- -5' |
|||||||
11027 | 5' | -55.4 | NC_002794.1 | + | 13812 | 0.7 | 0.800951 |
Target: 5'- -gGGCccGGCCGGCG-GCGAcGgCCUCCu -3' miRNA: 3'- gaUUGa-UCGGCUGCuCGCU-CgGGAGG- -5' |
|||||||
11027 | 5' | -55.4 | NC_002794.1 | + | 11646 | 0.74 | 0.627156 |
Target: 5'- -cGACgggcGGCCGACGAcGCG-GCCCgCCg -3' miRNA: 3'- gaUUGa---UCGGCUGCU-CGCuCGGGaGG- -5' |
|||||||
11027 | 5' | -55.4 | NC_002794.1 | + | 8106 | 0.67 | 0.933748 |
Target: 5'- uCUAGCgccaCCGAgCGGGCGGcGgCCUCCu -3' miRNA: 3'- -GAUUGauc-GGCU-GCUCGCU-CgGGAGG- -5' |
|||||||
11027 | 5' | -55.4 | NC_002794.1 | + | 293 | 0.66 | 0.959172 |
Target: 5'- cCUGGCgcGCCGaACGc-CGGGCCCgccCCa -3' miRNA: 3'- -GAUUGauCGGC-UGCucGCUCGGGa--GG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home