Results 41 - 60 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11027 | 5' | -55.4 | NC_002794.1 | + | 137637 | 0.66 | 0.959172 |
Target: 5'- -cGACgucCUGGCGGGCGccGGgCCUCCg -3' miRNA: 3'- gaUUGaucGGCUGCUCGC--UCgGGAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 135481 | 0.66 | 0.959172 |
Target: 5'- -cGACgccGCCGuCGAcgcgcGCGGGCCCgaugCCc -3' miRNA: 3'- gaUUGau-CGGCuGCU-----CGCUCGGGa---GG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 82495 | 0.66 | 0.959172 |
Target: 5'- -cGGCccGCCgcGACGcGCGAGaCCUUCCa -3' miRNA: 3'- gaUUGauCGG--CUGCuCGCUC-GGGAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 76832 | 0.66 | 0.962637 |
Target: 5'- -cAGC-GGCCGGCGAuGCGcGCCggCCu -3' miRNA: 3'- gaUUGaUCGGCUGCU-CGCuCGGgaGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 181227 | 0.66 | 0.962637 |
Target: 5'- -cGACgagauCCGGCGAcgGCGcGCCUUCCa -3' miRNA: 3'- gaUUGauc--GGCUGCU--CGCuCGGGAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 19235 | 0.66 | 0.954346 |
Target: 5'- cCUGAUcugAGCCGAUGAugugccgaccggccGCG-GCCC-CCg -3' miRNA: 3'- -GAUUGa--UCGGCUGCU--------------CGCuCGGGaGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 156420 | 0.66 | 0.951593 |
Target: 5'- -cGGCcacGGCCGGCGGGUGAGagaCCggucgcgCCg -3' miRNA: 3'- gaUUGa--UCGGCUGCUCGCUCg--GGa------GG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 57982 | 0.66 | 0.943126 |
Target: 5'- -cGACggcgAGCCGACGcGCcAGgCCUUCg -3' miRNA: 3'- gaUUGa---UCGGCUGCuCGcUCgGGAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 17504 | 0.66 | 0.947472 |
Target: 5'- -cGACgccGGCCGA-GAuCGGcGCCCUCCu -3' miRNA: 3'- gaUUGa--UCGGCUgCUcGCU-CGGGAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 49936 | 0.66 | 0.947472 |
Target: 5'- -aAACaAGUgGACGGGCaGGCgCUCCc -3' miRNA: 3'- gaUUGaUCGgCUGCUCGcUCGgGAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 19529 | 0.66 | 0.947472 |
Target: 5'- ------cGCCGGCGcGGCGcGGCCCgCCg -3' miRNA: 3'- gauugauCGGCUGC-UCGC-UCGGGaGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 182262 | 0.66 | 0.947472 |
Target: 5'- -cAGCgcGCCGAguccCGAGCG-GCCUcCCa -3' miRNA: 3'- gaUUGauCGGCU----GCUCGCuCGGGaGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 99752 | 0.66 | 0.947472 |
Target: 5'- cCUGGuCUGGCCGACGuuGCcgccGCCCgcggugCCg -3' miRNA: 3'- -GAUU-GAUCGGCUGCu-CGcu--CGGGa-----GG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 172142 | 0.66 | 0.947472 |
Target: 5'- aUAACUGGCCGGUGGGUGAGUg---- -3' miRNA: 3'- gAUUGAUCGGCUGCUCGCUCGggagg -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 141773 | 0.66 | 0.947472 |
Target: 5'- -cGAUU--CCGACGA-CGAGCCgUCCg -3' miRNA: 3'- gaUUGAucGGCUGCUcGCUCGGgAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 23898 | 0.66 | 0.949148 |
Target: 5'- -gGGCccgggAGCCGagugcagcagcguggGCGAGCGAGCgaUCCg -3' miRNA: 3'- gaUUGa----UCGGC---------------UGCUCGCUCGggAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 147493 | 0.66 | 0.951593 |
Target: 5'- -gAGCUGGCCGA-GAGCuucaccGAGuUCCUCg -3' miRNA: 3'- gaUUGAUCGGCUgCUCG------CUC-GGGAGg -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 95848 | 0.66 | 0.951593 |
Target: 5'- -cGGCcggggAGgCGGCGGGCGGGCCgUUUCa -3' miRNA: 3'- gaUUGa----UCgGCUGCUCGCUCGG-GAGG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 114180 | 0.66 | 0.951593 |
Target: 5'- gCUggUUGGCCaGGCGcAGCGGcGCCacggCCg -3' miRNA: 3'- -GAuuGAUCGG-CUGC-UCGCU-CGGga--GG- -5' |
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11027 | 5' | -55.4 | NC_002794.1 | + | 150056 | 0.66 | 0.951593 |
Target: 5'- -cGACUgcGGUgGgACGAGCGcgcucuGGCCUUCCu -3' miRNA: 3'- gaUUGA--UCGgC-UGCUCGC------UCGGGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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