miRNA display CGI


Results 61 - 80 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11027 5' -55.4 NC_002794.1 + 147493 0.66 0.951593
Target:  5'- -gAGCUGGCCGA-GAGCuucaccGAGuUCCUCg -3'
miRNA:   3'- gaUUGAUCGGCUgCUCG------CUC-GGGAGg -5'
11027 5' -55.4 NC_002794.1 + 23898 0.66 0.949148
Target:  5'- -gGGCccgggAGCCGagugcagcagcguggGCGAGCGAGCgaUCCg -3'
miRNA:   3'- gaUUGa----UCGGC---------------UGCUCGCUCGggAGG- -5'
11027 5' -55.4 NC_002794.1 + 84284 0.66 0.943126
Target:  5'- -cAGCU-GCCGACgggGAGCGgcGGCgCUUCCu -3'
miRNA:   3'- gaUUGAuCGGCUG---CUCGC--UCG-GGAGG- -5'
11027 5' -55.4 NC_002794.1 + 127798 0.66 0.943126
Target:  5'- -cGGCUccgAGUCGAcgcCGAGCGAGCgC-CCg -3'
miRNA:   3'- gaUUGA---UCGGCU---GCUCGCUCGgGaGG- -5'
11027 5' -55.4 NC_002794.1 + 70542 0.66 0.943126
Target:  5'- -cAGC-AGCCGAuCGuGCgccucGAGCCgCUCCa -3'
miRNA:   3'- gaUUGaUCGGCU-GCuCG-----CUCGG-GAGG- -5'
11027 5' -55.4 NC_002794.1 + 177771 0.67 0.938552
Target:  5'- -gGACaAGCgGGCGuauGGCGGGCcgucauCCUCCa -3'
miRNA:   3'- gaUUGaUCGgCUGC---UCGCUCG------GGAGG- -5'
11027 5' -55.4 NC_002794.1 + 145893 0.67 0.938552
Target:  5'- -aAGCggcgAGCgCGACGGGgGAGUCgaCCg -3'
miRNA:   3'- gaUUGa---UCG-GCUGCUCgCUCGGgaGG- -5'
11027 5' -55.4 NC_002794.1 + 62494 0.67 0.938552
Target:  5'- -cGAgUGGaCGGCGGGCGgcgccgccGGCgCCUCCg -3'
miRNA:   3'- gaUUgAUCgGCUGCUCGC--------UCG-GGAGG- -5'
11027 5' -55.4 NC_002794.1 + 144774 0.67 0.938552
Target:  5'- -cAGCUGGCCGGCGucgccGCuGGCUuCUCUg -3'
miRNA:   3'- gaUUGAUCGGCUGCu----CGcUCGG-GAGG- -5'
11027 5' -55.4 NC_002794.1 + 72876 0.67 0.933748
Target:  5'- -cGACUccucGGCCGGgucGCG-GCCCUCCu -3'
miRNA:   3'- gaUUGA----UCGGCUgcuCGCuCGGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 149215 0.66 0.943126
Target:  5'- -cGGCUGGCCGGa-AGCGAGgCgCCgCCg -3'
miRNA:   3'- gaUUGAUCGGCUgcUCGCUC-G-GGaGG- -5'
11027 5' -55.4 NC_002794.1 + 190154 0.66 0.947472
Target:  5'- --uACU-GCUGGCG-GCG-GCUCUCCu -3'
miRNA:   3'- gauUGAuCGGCUGCuCGCuCGGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 141773 0.66 0.947472
Target:  5'- -cGAUU--CCGACGA-CGAGCCgUCCg -3'
miRNA:   3'- gaUUGAucGGCUGCUcGCUCGGgAGG- -5'
11027 5' -55.4 NC_002794.1 + 172142 0.66 0.947472
Target:  5'- aUAACUGGCCGGUGGGUGAGUg---- -3'
miRNA:   3'- gAUUGAUCGGCUGCUCGCUCGggagg -5'
11027 5' -55.4 NC_002794.1 + 99752 0.66 0.947472
Target:  5'- cCUGGuCUGGCCGACGuuGCcgccGCCCgcggugCCg -3'
miRNA:   3'- -GAUU-GAUCGGCUGCu-CGcu--CGGGa-----GG- -5'
11027 5' -55.4 NC_002794.1 + 182262 0.66 0.947472
Target:  5'- -cAGCgcGCCGAguccCGAGCG-GCCUcCCa -3'
miRNA:   3'- gaUUGauCGGCU----GCUCGCuCGGGaGG- -5'
11027 5' -55.4 NC_002794.1 + 19529 0.66 0.947472
Target:  5'- ------cGCCGGCGcGGCGcGGCCCgCCg -3'
miRNA:   3'- gauugauCGGCUGC-UCGC-UCGGGaGG- -5'
11027 5' -55.4 NC_002794.1 + 49936 0.66 0.947472
Target:  5'- -aAACaAGUgGACGGGCaGGCgCUCCc -3'
miRNA:   3'- gaUUGaUCGgCUGCUCGcUCGgGAGG- -5'
11027 5' -55.4 NC_002794.1 + 17504 0.66 0.947472
Target:  5'- -cGACgccGGCCGA-GAuCGGcGCCCUCCu -3'
miRNA:   3'- gaUUGa--UCGGCUgCUcGCU-CGGGAGG- -5'
11027 5' -55.4 NC_002794.1 + 57982 0.66 0.943126
Target:  5'- -cGACggcgAGCCGACGcGCcAGgCCUUCg -3'
miRNA:   3'- gaUUGa---UCGGCUGCuCGcUCgGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.