miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11028 3' -55.5 NC_002794.1 + 183458 0.66 0.949444
Target:  5'- --cCGCCGGCgcccgcccgccgcgaGUCCGCGGCccGAUCc- -3'
miRNA:   3'- cuaGCGGUCG---------------UAGGCGUCGu-CUAGcu -5'
11028 3' -55.5 NC_002794.1 + 13122 0.66 0.947753
Target:  5'- gGGUCGCCGcGCggCuCGCucgcGCGGGUCGu -3'
miRNA:   3'- -CUAGCGGU-CGuaG-GCGu---CGUCUAGCu -5'
11028 3' -55.5 NC_002794.1 + 117169 0.66 0.947753
Target:  5'- --cCGCUugAGCGUCUGCcggauuucgcGCAGAUCGGc -3'
miRNA:   3'- cuaGCGG--UCGUAGGCGu---------CGUCUAGCU- -5'
11028 3' -55.5 NC_002794.1 + 150688 0.66 0.947753
Target:  5'- uGAUCGUCGGCAgcCCG-AGUacuucgAGAUCGAc -3'
miRNA:   3'- -CUAGCGGUCGUa-GGCgUCG------UCUAGCU- -5'
11028 3' -55.5 NC_002794.1 + 115325 0.66 0.947753
Target:  5'- cGGUCGCCgcGGCGUCCG-GGCcGcUCGGc -3'
miRNA:   3'- -CUAGCGG--UCGUAGGCgUCGuCuAGCU- -5'
11028 3' -55.5 NC_002794.1 + 150838 0.66 0.947753
Target:  5'- cGUCGUCAGC-UCCaGCGGCGGccgCGu -3'
miRNA:   3'- cUAGCGGUCGuAGG-CGUCGUCua-GCu -5'
11028 3' -55.5 NC_002794.1 + 104008 0.66 0.947325
Target:  5'- --cCGCCGGCGgaacgccUCCGCAGCgAGcguUCGc -3'
miRNA:   3'- cuaGCGGUCGU-------AGGCGUCG-UCu--AGCu -5'
11028 3' -55.5 NC_002794.1 + 67396 0.66 0.943365
Target:  5'- --gCGCCAGCGUCgGCGcCAGcGUCGn -3'
miRNA:   3'- cuaGCGGUCGUAGgCGUcGUC-UAGCu -5'
11028 3' -55.5 NC_002794.1 + 34080 0.66 0.943365
Target:  5'- --cCGCCGGCggCCG-GGCAGccGUCGGg -3'
miRNA:   3'- cuaGCGGUCGuaGGCgUCGUC--UAGCU- -5'
11028 3' -55.5 NC_002794.1 + 119393 0.66 0.943365
Target:  5'- ---gGCCAGCAccuggcgCCGCAGCccGAUCa- -3'
miRNA:   3'- cuagCGGUCGUa------GGCGUCGu-CUAGcu -5'
11028 3' -55.5 NC_002794.1 + 128160 0.66 0.943365
Target:  5'- --aCGgCGGCucgcgCCGCGGaCGGGUCGGu -3'
miRNA:   3'- cuaGCgGUCGua---GGCGUC-GUCUAGCU- -5'
11028 3' -55.5 NC_002794.1 + 100830 0.66 0.943365
Target:  5'- cGGggGCCGGCAgccgggcuUCCGCAccgcGCAGA-CGAa -3'
miRNA:   3'- -CUagCGGUCGU--------AGGCGU----CGUCUaGCU- -5'
11028 3' -55.5 NC_002794.1 + 137606 0.66 0.943365
Target:  5'- --cCGCCGGCggUCGCGGCGG--CGGu -3'
miRNA:   3'- cuaGCGGUCGuaGGCGUCGUCuaGCU- -5'
11028 3' -55.5 NC_002794.1 + 136723 0.66 0.943365
Target:  5'- cGGUC-CCGGCGUCCa-GGCGG-UCGAg -3'
miRNA:   3'- -CUAGcGGUCGUAGGcgUCGUCuAGCU- -5'
11028 3' -55.5 NC_002794.1 + 115783 0.66 0.940154
Target:  5'- cGAUCGCCuccguguaccucuggAGCGUCgGCAGaagcucuuccgccUGGAUCGGc -3'
miRNA:   3'- -CUAGCGG---------------UCGUAGgCGUC-------------GUCUAGCU- -5'
11028 3' -55.5 NC_002794.1 + 177842 0.66 0.938742
Target:  5'- uGAUCGCCugccaugcGCGagCGCGGCcacgacggAGAUCGGa -3'
miRNA:   3'- -CUAGCGGu-------CGUagGCGUCG--------UCUAGCU- -5'
11028 3' -55.5 NC_002794.1 + 66735 0.66 0.938742
Target:  5'- --cCGCCGGCggUgGCGGCGGcgCGu -3'
miRNA:   3'- cuaGCGGUCGuaGgCGUCGUCuaGCu -5'
11028 3' -55.5 NC_002794.1 + 182095 0.66 0.938742
Target:  5'- ---aGCCAGCGUUCuucgcgGUAGCGGAUCc- -3'
miRNA:   3'- cuagCGGUCGUAGG------CGUCGUCUAGcu -5'
11028 3' -55.5 NC_002794.1 + 44043 0.66 0.938742
Target:  5'- --cCGCCcccGGgGUCCGCGGCAG--CGAc -3'
miRNA:   3'- cuaGCGG---UCgUAGGCGUCGUCuaGCU- -5'
11028 3' -55.5 NC_002794.1 + 113542 0.66 0.933885
Target:  5'- cGUCGCCGGC--CCGgAGCAGGcgcCGGa -3'
miRNA:   3'- cUAGCGGUCGuaGGCgUCGUCUa--GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.