miRNA display CGI


Results 1 - 20 of 22 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11028 5' -59.4 NC_002794.1 + 36934 0.66 0.798442
Target:  5'- cGCGGAggagaaagUCCGCGUcgcGCGGC-GGcagGCAg -3'
miRNA:   3'- aCGCCU--------AGGCGCA---CGUCGaCCa--CGUa -5'
11028 5' -59.4 NC_002794.1 + 139632 0.66 0.798442
Target:  5'- gGUGGcgaagCCcacgGUGCAGCUGGUGUAg -3'
miRNA:   3'- aCGCCua---GGcg--CACGUCGACCACGUa -5'
11028 5' -59.4 NC_002794.1 + 71336 0.66 0.797561
Target:  5'- gGCGGcgaugucGUCCGCcagGCGGCgcagcaGGUGCGg -3'
miRNA:   3'- aCGCC-------UAGGCGca-CGUCGa-----CCACGUa -5'
11028 5' -59.4 NC_002794.1 + 99916 0.66 0.789567
Target:  5'- -cCGGAUCaCGcCGUGCGGCgUGGUcuuGCGg -3'
miRNA:   3'- acGCCUAG-GC-GCACGUCG-ACCA---CGUa -5'
11028 5' -59.4 NC_002794.1 + 33471 0.66 0.762154
Target:  5'- cGCGcccacgCCGC-UGCAGCUGG-GCAa -3'
miRNA:   3'- aCGCcua---GGCGcACGUCGACCaCGUa -5'
11028 5' -59.4 NC_002794.1 + 107878 0.66 0.762154
Target:  5'- cGCGGAg--GCGgcGCGGCgGGUGCGg -3'
miRNA:   3'- aCGCCUaggCGCa-CGUCGaCCACGUa -5'
11028 5' -59.4 NC_002794.1 + 61165 0.67 0.743311
Target:  5'- cGCGcGGUCCGgauCG-GCGGCUGGUcGCu- -3'
miRNA:   3'- aCGC-CUAGGC---GCaCGUCGACCA-CGua -5'
11028 5' -59.4 NC_002794.1 + 87354 0.67 0.733745
Target:  5'- aGCGGGUCCgGCGgcgaGCGGCguucUGGgcgGCGc -3'
miRNA:   3'- aCGCCUAGG-CGCa---CGUCG----ACCa--CGUa -5'
11028 5' -59.4 NC_002794.1 + 55863 0.67 0.730859
Target:  5'- aUGCGGG-CCGCGaucugcgcgcccagUGCAcgaucauggcGUUGGUGCAg -3'
miRNA:   3'- -ACGCCUaGGCGC--------------ACGU----------CGACCACGUa -5'
11028 5' -59.4 NC_002794.1 + 138101 0.67 0.724094
Target:  5'- gGCGGA-CCGUcUGCAGgaGG-GCGUg -3'
miRNA:   3'- aCGCCUaGGCGcACGUCgaCCaCGUA- -5'
11028 5' -59.4 NC_002794.1 + 44051 0.67 0.718267
Target:  5'- --gGGGUCCGCG-GCAGCgacagaagccgcucgUGGUGaCAUa -3'
miRNA:   3'- acgCCUAGGCGCaCGUCG---------------ACCAC-GUA- -5'
11028 5' -59.4 NC_002794.1 + 878 0.67 0.714368
Target:  5'- gGCGG-UCgGCGUGCGcGCgggccgGGUGCc- -3'
miRNA:   3'- aCGCCuAGgCGCACGU-CGa-----CCACGua -5'
11028 5' -59.4 NC_002794.1 + 110628 0.67 0.714368
Target:  5'- cGCGGcgCCGCG-GCGGCggGGU-CGg -3'
miRNA:   3'- aCGCCuaGGCGCaCGUCGa-CCAcGUa -5'
11028 5' -59.4 NC_002794.1 + 162496 0.67 0.714368
Target:  5'- aGCcGAUUCGCGUacgugGCAGCUGG-GUAUc -3'
miRNA:   3'- aCGcCUAGGCGCA-----CGUCGACCaCGUA- -5'
11028 5' -59.4 NC_002794.1 + 138667 0.68 0.694721
Target:  5'- cUGCGGAuuggUCUGCGUgGCGGCgGGUcgugauGCAa -3'
miRNA:   3'- -ACGCCU----AGGCGCA-CGUCGaCCA------CGUa -5'
11028 5' -59.4 NC_002794.1 + 38115 0.69 0.614775
Target:  5'- cGCGGGagagCCGCGc-CAGCUGGgGCGUg -3'
miRNA:   3'- aCGCCUa---GGCGCacGUCGACCaCGUA- -5'
11028 5' -59.4 NC_002794.1 + 189480 0.69 0.614775
Target:  5'- cGCGGGcgUCGUGUGCacccAGCUGG-GCAc -3'
miRNA:   3'- aCGCCUa-GGCGCACG----UCGACCaCGUa -5'
11028 5' -59.4 NC_002794.1 + 142201 0.7 0.56496
Target:  5'- gUGCGGGaagCgGCGgcgGCAGCggcGGUGCGg -3'
miRNA:   3'- -ACGCCUa--GgCGCa--CGUCGa--CCACGUa -5'
11028 5' -59.4 NC_002794.1 + 115628 0.7 0.562986
Target:  5'- gGCGGGUCaggugguucaggGCGUGagccaggAGCUGGUGCAg -3'
miRNA:   3'- aCGCCUAGg-----------CGCACg------UCGACCACGUa -5'
11028 5' -59.4 NC_002794.1 + 32567 0.7 0.555107
Target:  5'- cGCGGAUagUCGCGcGCGGC-GGUGCc- -3'
miRNA:   3'- aCGCCUA--GGCGCaCGUCGaCCACGua -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.