miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11029 3' -62.9 NC_002794.1 + 101613 0.66 0.706422
Target:  5'- cCCGCCGggCGggggUGCCGUUUCgUCCGc -3'
miRNA:   3'- uGGCGGCgaGCa---GCGGUAGAGgGGGC- -5'
11029 3' -62.9 NC_002794.1 + 75372 0.66 0.706422
Target:  5'- cCCGCCGCggccggCGgcggCgGCC-UCUCCCCg- -3'
miRNA:   3'- uGGCGGCGa-----GCa---G-CGGuAGAGGGGgc -5'
11029 3' -62.9 NC_002794.1 + 61244 0.66 0.706422
Target:  5'- gGCUGCUGgUCaUCGCgCuccUCUCCCUCGa -3'
miRNA:   3'- -UGGCGGCgAGcAGCG-Gu--AGAGGGGGC- -5'
11029 3' -62.9 NC_002794.1 + 115592 0.66 0.706422
Target:  5'- aGCgGCUGCg-GUCGaCCcgCUCgCCCGg -3'
miRNA:   3'- -UGgCGGCGagCAGC-GGuaGAGgGGGC- -5'
11029 3' -62.9 NC_002794.1 + 138884 0.66 0.706422
Target:  5'- gUCGUCGCUC-UCGCCuUCUUCaCUCGa -3'
miRNA:   3'- uGGCGGCGAGcAGCGGuAGAGG-GGGC- -5'
11029 3' -62.9 NC_002794.1 + 187906 0.66 0.706422
Target:  5'- -gUGCCGCUCGccCGCCGgg-CCCCg- -3'
miRNA:   3'- ugGCGGCGAGCa-GCGGUagaGGGGgc -5'
11029 3' -62.9 NC_002794.1 + 56524 0.66 0.706422
Target:  5'- uCCGgCGCUCGuuccggUCGCCAuccggagcgcUCgccgccgCCCCCGc -3'
miRNA:   3'- uGGCgGCGAGC------AGCGGU----------AGa------GGGGGC- -5'
11029 3' -62.9 NC_002794.1 + 38697 0.66 0.706422
Target:  5'- cACCGCCGC-----GCCGUCgagCgCCCCGg -3'
miRNA:   3'- -UGGCGGCGagcagCGGUAGa--G-GGGGC- -5'
11029 3' -62.9 NC_002794.1 + 11548 0.66 0.700805
Target:  5'- gACCGCgGCUgGUCGCUagaaugucaggggcaAcuggUCUgCCCCGc -3'
miRNA:   3'- -UGGCGgCGAgCAGCGG---------------U----AGAgGGGGC- -5'
11029 3' -62.9 NC_002794.1 + 135530 0.66 0.697051
Target:  5'- cGCgCGCCGCUCgGUCGCCGa--CCgaCCGa -3'
miRNA:   3'- -UG-GCGGCGAG-CAGCGGUagaGGg-GGC- -5'
11029 3' -62.9 NC_002794.1 + 111052 0.66 0.697051
Target:  5'- -gUGCaGCUCGgucacUUGCCAgacgcgCUCCCCCGu -3'
miRNA:   3'- ugGCGgCGAGC-----AGCGGUa-----GAGGGGGC- -5'
11029 3' -62.9 NC_002794.1 + 78297 0.66 0.697051
Target:  5'- cCCGCCccgucaccugGCUC-UCGCC--CUCUCCCGg -3'
miRNA:   3'- uGGCGG----------CGAGcAGCGGuaGAGGGGGC- -5'
11029 3' -62.9 NC_002794.1 + 40494 0.66 0.687632
Target:  5'- gGCCGgCGCUCGcCGCUcgaGUCacggCCgCCGa -3'
miRNA:   3'- -UGGCgGCGAGCaGCGG---UAGa---GGgGGC- -5'
11029 3' -62.9 NC_002794.1 + 8321 0.66 0.687632
Target:  5'- cACCGCCGCgcccCG-CGCCAaacgCCCCa- -3'
miRNA:   3'- -UGGCGGCGa---GCaGCGGUaga-GGGGgc -5'
11029 3' -62.9 NC_002794.1 + 69800 0.66 0.687632
Target:  5'- cGCCGCCGCguagccCGcCGCCGcgaccggCgUCCgCCCGg -3'
miRNA:   3'- -UGGCGGCGa-----GCaGCGGUa------G-AGG-GGGC- -5'
11029 3' -62.9 NC_002794.1 + 183753 0.66 0.687632
Target:  5'- gGCCGcCCGCcacgaagaacgUCGUCGacagcagCAUCUcggCCCCCGu -3'
miRNA:   3'- -UGGC-GGCG-----------AGCAGCg------GUAGA---GGGGGC- -5'
11029 3' -62.9 NC_002794.1 + 89027 0.66 0.687632
Target:  5'- uCCGUCGUUUucCGCgGUCUCCCgCGa -3'
miRNA:   3'- uGGCGGCGAGcaGCGgUAGAGGGgGC- -5'
11029 3' -62.9 NC_002794.1 + 192681 0.66 0.687632
Target:  5'- cGCCgGCCGC-CGUCGUaCGUCUUCagcagCCCGc -3'
miRNA:   3'- -UGG-CGGCGaGCAGCG-GUAGAGG-----GGGC- -5'
11029 3' -62.9 NC_002794.1 + 152103 0.66 0.686688
Target:  5'- uACCGCCgucugggGCUUGcugCGCCG-CUCCgCCCu -3'
miRNA:   3'- -UGGCGG-------CGAGCa--GCGGUaGAGG-GGGc -5'
11029 3' -62.9 NC_002794.1 + 46118 0.66 0.678173
Target:  5'- uCC-CCGCcCG-CGUCggCUCCCCCGu -3'
miRNA:   3'- uGGcGGCGaGCaGCGGuaGAGGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.