miRNA display CGI


Results 1 - 20 of 425 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11029 5' -53.7 NC_002794.1 + 1258 0.66 0.98328
Target:  5'- -cCGGAGGCcagugugcgccagccACCGGCcuucuaaggACCG--GCCGCu -3'
miRNA:   3'- aaGCCUUUG---------------UGGCCG---------UGGCuuUGGCG- -5'
11029 5' -53.7 NC_002794.1 + 112554 0.66 0.982507
Target:  5'- -gCGGGGcucgcCGCCGGcCACCc-GGCCGCu -3'
miRNA:   3'- aaGCCUUu----GUGGCC-GUGGcuUUGGCG- -5'
11029 5' -53.7 NC_002794.1 + 190377 0.66 0.982507
Target:  5'- -gCGGguGCucccgcuCCuGCAUCGAGAUCGCg -3'
miRNA:   3'- aaGCCuuUGu------GGcCGUGGCUUUGGCG- -5'
11029 5' -53.7 NC_002794.1 + 126368 0.66 0.982507
Target:  5'- uUUCGccgcuGCGUgGGCGCCGggGCCuGCg -3'
miRNA:   3'- -AAGCcuu--UGUGgCCGUGGCuuUGG-CG- -5'
11029 5' -53.7 NC_002794.1 + 115280 0.66 0.982507
Target:  5'- -aCGGcguGGACACgGGgaACgGGGACCGCu -3'
miRNA:   3'- aaGCC---UUUGUGgCCg-UGgCUUUGGCG- -5'
11029 5' -53.7 NC_002794.1 + 102072 0.66 0.982507
Target:  5'- -cCGGGcGACcuGCCGcGgGCCGAcgAGCCGCc -3'
miRNA:   3'- aaGCCU-UUG--UGGC-CgUGGCU--UUGGCG- -5'
11029 5' -53.7 NC_002794.1 + 128460 0.66 0.982507
Target:  5'- -cCGGAgcccagGACgACCGGuCACCGGgucgcgGACCGg -3'
miRNA:   3'- aaGCCU------UUG-UGGCC-GUGGCU------UUGGCg -5'
11029 5' -53.7 NC_002794.1 + 187599 0.66 0.982507
Target:  5'- gUCGcGAcGC-CCGGCGUCGcccaGAGCCGCu -3'
miRNA:   3'- aAGC-CUuUGuGGCCGUGGC----UUUGGCG- -5'
11029 5' -53.7 NC_002794.1 + 12169 0.66 0.982507
Target:  5'- -cCGGAucgucgccgccGACGCCGccGCgGCCGGGcGCCGCu -3'
miRNA:   3'- aaGCCU-----------UUGUGGC--CG-UGGCUU-UGGCG- -5'
11029 5' -53.7 NC_002794.1 + 21960 0.66 0.982507
Target:  5'- gUCGGccGCuccCgCGGCGCCGucgucuCCGCg -3'
miRNA:   3'- aAGCCuuUGu--G-GCCGUGGCuuu---GGCG- -5'
11029 5' -53.7 NC_002794.1 + 114360 0.66 0.982507
Target:  5'- -cCGccAGgGCCGGCugCaGGGCCGCg -3'
miRNA:   3'- aaGCcuUUgUGGCCGugGcUUUGGCG- -5'
11029 5' -53.7 NC_002794.1 + 63904 0.66 0.982507
Target:  5'- -cCGGccguCGCUcGCGCCGcGACCGCc -3'
miRNA:   3'- aaGCCuuu-GUGGcCGUGGCuUUGGCG- -5'
11029 5' -53.7 NC_002794.1 + 54331 0.66 0.982507
Target:  5'- gUCaGGAAcgGCACCuGGUACgCGuu-CCGCg -3'
miRNA:   3'- aAG-CCUU--UGUGG-CCGUG-GCuuuGGCG- -5'
11029 5' -53.7 NC_002794.1 + 60940 0.66 0.982507
Target:  5'- aUCGGccuGCACCGccugcucgacgaGCGCCGGGccuACgCGCg -3'
miRNA:   3'- aAGCCuu-UGUGGC------------CGUGGCUU---UG-GCG- -5'
11029 5' -53.7 NC_002794.1 + 54233 0.66 0.982507
Target:  5'- cUCGGAugaagcggccgAGCGCgcgguccaCGGCGCCGcgucgggccAAACCGUg -3'
miRNA:   3'- aAGCCU-----------UUGUG--------GCCGUGGC---------UUUGGCG- -5'
11029 5' -53.7 NC_002794.1 + 36352 0.66 0.982507
Target:  5'- -cCGGcguGCG-CGGcCACCGGGugCGCg -3'
miRNA:   3'- aaGCCuu-UGUgGCC-GUGGCUUugGCG- -5'
11029 5' -53.7 NC_002794.1 + 101597 0.66 0.98231
Target:  5'- --gGGggGCggguGCCGGCccGCCGGGcggggguGCCGUu -3'
miRNA:   3'- aagCCuuUG----UGGCCG--UGGCUU-------UGGCG- -5'
11029 5' -53.7 NC_002794.1 + 157289 0.66 0.98231
Target:  5'- gUCGGuagcgugugccucAGACACgCGGCGCuCGAAGacgaagaCGCg -3'
miRNA:   3'- aAGCC-------------UUUGUG-GCCGUG-GCUUUg------GCG- -5'
11029 5' -53.7 NC_002794.1 + 141470 0.66 0.980456
Target:  5'- -cCGGAcuggcgAGCAUCGuGCcgauCCGcAAACCGCa -3'
miRNA:   3'- aaGCCU------UUGUGGC-CGu---GGC-UUUGGCG- -5'
11029 5' -53.7 NC_002794.1 + 113579 0.66 0.980456
Target:  5'- cUCGGcguccuGCACgaCGGCGCgGAGuuucuccagcGCCGCg -3'
miRNA:   3'- aAGCCuu----UGUG--GCCGUGgCUU----------UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.