miRNA display CGI


Results 1 - 20 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11030 3' -60.9 NC_002794.1 + 183142 0.66 0.799458
Target:  5'- cGCGCAgcuCCGCggacaCGCGGCCGGGcugccCGaGCCGg -3'
miRNA:   3'- -UGUGU---GGUG-----GCGCUGGUCCa----GC-CGGC- -5'
11030 3' -60.9 NC_002794.1 + 55376 0.66 0.799458
Target:  5'- -gGCgGCCGagGCGGCCgAGG-CGGCCGa -3'
miRNA:   3'- ugUG-UGGUggCGCUGG-UCCaGCCGGC- -5'
11030 3' -60.9 NC_002794.1 + 58325 0.66 0.799458
Target:  5'- uGCACGCCGCgCGUGcucgUCGGGaaccugccgcUCGGCCu -3'
miRNA:   3'- -UGUGUGGUG-GCGCu---GGUCC----------AGCCGGc -5'
11030 3' -60.9 NC_002794.1 + 23954 0.66 0.799458
Target:  5'- gGCGCACUuggcuccgaGCCaGCGGCgAGGcCGGCg- -3'
miRNA:   3'- -UGUGUGG---------UGG-CGCUGgUCCaGCCGgc -5'
11030 3' -60.9 NC_002794.1 + 58041 0.66 0.799458
Target:  5'- cCGCGCCGCC-CGuCCccGUCGGCgGc -3'
miRNA:   3'- uGUGUGGUGGcGCuGGucCAGCCGgC- -5'
11030 3' -60.9 NC_002794.1 + 113739 0.66 0.799458
Target:  5'- -uGCACCgACCG-GACCAGGcgcgcgagggugUCGGCa- -3'
miRNA:   3'- ugUGUGG-UGGCgCUGGUCC------------AGCCGgc -5'
11030 3' -60.9 NC_002794.1 + 150799 0.66 0.799458
Target:  5'- cCAgGCC-CCGCGGC--GGaCGGCCGa -3'
miRNA:   3'- uGUgUGGuGGCGCUGguCCaGCCGGC- -5'
11030 3' -60.9 NC_002794.1 + 135515 0.66 0.799458
Target:  5'- cGCACACCGgacgcUCGCGcGCCGcucGGUC-GCCGa -3'
miRNA:   3'- -UGUGUGGU-----GGCGC-UGGU---CCAGcCGGC- -5'
11030 3' -60.9 NC_002794.1 + 188347 0.66 0.799458
Target:  5'- -gGCGCCGUCGCGcccguccgGCCGGcGgCGGCCGa -3'
miRNA:   3'- ugUGUGGUGGCGC--------UGGUC-CaGCCGGC- -5'
11030 3' -60.9 NC_002794.1 + 151940 0.66 0.799458
Target:  5'- aGCGCuccGCCGcCCGCGAcgacggccCCGGGugcuccUCGGCCc -3'
miRNA:   3'- -UGUG---UGGU-GGCGCU--------GGUCC------AGCCGGc -5'
11030 3' -60.9 NC_002794.1 + 58158 0.66 0.790908
Target:  5'- uGCACuuuuACCAgCGCcGCCAGGagGuGCCGc -3'
miRNA:   3'- -UGUG----UGGUgGCGcUGGUCCagC-CGGC- -5'
11030 3' -60.9 NC_002794.1 + 71395 0.66 0.790908
Target:  5'- --cCACgGuCUGCGGCuCGGGcCGGCCGu -3'
miRNA:   3'- uguGUGgU-GGCGCUG-GUCCaGCCGGC- -5'
11030 3' -60.9 NC_002794.1 + 194118 0.66 0.790908
Target:  5'- -gGCACCGCgCGCacGGCUgAGGcagCGGCCGc -3'
miRNA:   3'- ugUGUGGUG-GCG--CUGG-UCCa--GCCGGC- -5'
11030 3' -60.9 NC_002794.1 + 82324 0.66 0.790908
Target:  5'- cGCACAcCCGCCGUGACCu--UCGagcGCCa -3'
miRNA:   3'- -UGUGU-GGUGGCGCUGGuccAGC---CGGc -5'
11030 3' -60.9 NC_002794.1 + 32807 0.66 0.790908
Target:  5'- ----uUCGCCGCGACCGucgucuucGUCGGCCu -3'
miRNA:   3'- uguguGGUGGCGCUGGUc-------CAGCCGGc -5'
11030 3' -60.9 NC_002794.1 + 54925 0.66 0.790908
Target:  5'- cGCGCAgcguCCGCagCGCGACCGuGGUCaGCuCGg -3'
miRNA:   3'- -UGUGU----GGUG--GCGCUGGU-CCAGcCG-GC- -5'
11030 3' -60.9 NC_002794.1 + 112800 0.66 0.790908
Target:  5'- -aACGCCGCCGC--CCAGcGcagcgucugcUCGGCCGc -3'
miRNA:   3'- ugUGUGGUGGCGcuGGUC-C----------AGCCGGC- -5'
11030 3' -60.9 NC_002794.1 + 151712 0.66 0.790908
Target:  5'- aGCGCGCCAgUCGCGcgaAGGacgucgUCGGCCGc -3'
miRNA:   3'- -UGUGUGGU-GGCGCuggUCC------AGCCGGC- -5'
11030 3' -60.9 NC_002794.1 + 138943 0.66 0.790046
Target:  5'- -uGCGCCcccaccguggcguGCUGCGACgcggcggaCGGGUUGGCCu -3'
miRNA:   3'- ugUGUGG-------------UGGCGCUG--------GUCCAGCCGGc -5'
11030 3' -60.9 NC_002794.1 + 116354 0.66 0.790046
Target:  5'- gUACACgGCCGCgcgguccGACC-GGUCGGUgGc -3'
miRNA:   3'- uGUGUGgUGGCG-------CUGGuCCAGCCGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.