miRNA display CGI


Results 1 - 20 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11030 3' -60.9 NC_002794.1 + 186286 0.85 0.064295
Target:  5'- -gGCGgCACCGCGGCCAGG-CGGCCGg -3'
miRNA:   3'- ugUGUgGUGGCGCUGGUCCaGCCGGC- -5'
11030 3' -60.9 NC_002794.1 + 105808 0.81 0.12345
Target:  5'- gACGgACCGaaagCGCGACCGGGUCGGUCGa -3'
miRNA:   3'- -UGUgUGGUg---GCGCUGGUCCAGCCGGC- -5'
11030 3' -60.9 NC_002794.1 + 184569 0.81 0.126526
Target:  5'- cACGCGCCGCCGCGGCgGcGG-CGGCCa -3'
miRNA:   3'- -UGUGUGGUGGCGCUGgU-CCaGCCGGc -5'
11030 3' -60.9 NC_002794.1 + 185351 0.79 0.161396
Target:  5'- cGCGCGCCGCCGCGAgCGGGcCGaacGCCGc -3'
miRNA:   3'- -UGUGUGGUGGCGCUgGUCCaGC---CGGC- -5'
11030 3' -60.9 NC_002794.1 + 104488 0.79 0.169338
Target:  5'- -gGCgGCCACgGCGGCCGGGUCGGgCGa -3'
miRNA:   3'- ugUG-UGGUGgCGCUGGUCCAGCCgGC- -5'
11030 3' -60.9 NC_002794.1 + 120123 0.79 0.177629
Target:  5'- cGCGCGCgACgGCGACCGGGgacgGGCCGg -3'
miRNA:   3'- -UGUGUGgUGgCGCUGGUCCag--CCGGC- -5'
11030 3' -60.9 NC_002794.1 + 53611 0.78 0.186277
Target:  5'- cCGgGCCGCCGCagcgucggacgGACgAGGUCGGCCGa -3'
miRNA:   3'- uGUgUGGUGGCG-----------CUGgUCCAGCCGGC- -5'
11030 3' -60.9 NC_002794.1 + 72412 0.78 0.19074
Target:  5'- aGCACACCGCCGCGGCgGaGGagGaGCCGg -3'
miRNA:   3'- -UGUGUGGUGGCGCUGgU-CCagC-CGGC- -5'
11030 3' -60.9 NC_002794.1 + 69811 0.78 0.195295
Target:  5'- aGCcCGCCGCCGCGACCGGcGUCcGCCc -3'
miRNA:   3'- -UGuGUGGUGGCGCUGGUC-CAGcCGGc -5'
11030 3' -60.9 NC_002794.1 + 12185 0.78 0.199946
Target:  5'- -gACGCCGCCGCGGCCGGG-C-GCCGc -3'
miRNA:   3'- ugUGUGGUGGCGCUGGUCCaGcCGGC- -5'
11030 3' -60.9 NC_002794.1 + 151206 0.78 0.204693
Target:  5'- uGCGCGCCGCCgGCuACCGGGUCuugGGCCa -3'
miRNA:   3'- -UGUGUGGUGG-CGcUGGUCCAG---CCGGc -5'
11030 3' -60.9 NC_002794.1 + 49393 0.77 0.235258
Target:  5'- gGC-CGCCGCCGuCGGCCAcGG-CGGCCGc -3'
miRNA:   3'- -UGuGUGGUGGC-GCUGGU-CCaGCCGGC- -5'
11030 3' -60.9 NC_002794.1 + 181583 0.76 0.251359
Target:  5'- gACAgGCUgcggGCCGCGACCGGGUCGccccguuGCCGc -3'
miRNA:   3'- -UGUgUGG----UGGCGCUGGUCCAGC-------CGGC- -5'
11030 3' -60.9 NC_002794.1 + 101565 0.76 0.273818
Target:  5'- aACGCcggcgggagugccgGCCGCCGCGGCCGGGggGGCgGg -3'
miRNA:   3'- -UGUG--------------UGGUGGCGCUGGUCCagCCGgC- -5'
11030 3' -60.9 NC_002794.1 + 104786 0.76 0.278126
Target:  5'- gACACGCCGacaggcggugcugcuUCGCGaugGCCAGGUCGGUCa -3'
miRNA:   3'- -UGUGUGGU---------------GGCGC---UGGUCCAGCCGGc -5'
11030 3' -60.9 NC_002794.1 + 34772 0.75 0.281862
Target:  5'- gGCACgGCCGcCCGCG-CCAGccgaGUCGGCCGa -3'
miRNA:   3'- -UGUG-UGGU-GGCGCuGGUC----CAGCCGGC- -5'
11030 3' -60.9 NC_002794.1 + 44702 0.75 0.288177
Target:  5'- cGC-CGCCcgGCCGCGACCGcGGcgacgUCGGCCGg -3'
miRNA:   3'- -UGuGUGG--UGGCGCUGGU-CC-----AGCCGGC- -5'
11030 3' -60.9 NC_002794.1 + 142791 0.75 0.294602
Target:  5'- gGCGCgugcaGCCGCaguuCGGCCGGGUCGGCCu -3'
miRNA:   3'- -UGUG-----UGGUGgc--GCUGGUCCAGCCGGc -5'
11030 3' -60.9 NC_002794.1 + 32288 0.75 0.294602
Target:  5'- aGCgACGCCGCCGCcGCCGcGG-CGGCCGc -3'
miRNA:   3'- -UG-UGUGGUGGCGcUGGU-CCaGCCGGC- -5'
11030 3' -60.9 NC_002794.1 + 113892 0.75 0.317281
Target:  5'- cGCGCGUCGgCGCGGucugcaggaaggccuCCAGGUCGGCCGc -3'
miRNA:   3'- -UGUGUGGUgGCGCU---------------GGUCCAGCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.