miRNA display CGI


Results 21 - 40 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11030 3' -60.9 NC_002794.1 + 107216 0.66 0.782231
Target:  5'- -gGCGCCGCCgggcggcgcGCGACgGGGgCGGCg- -3'
miRNA:   3'- ugUGUGGUGG---------CGCUGgUCCaGCCGgc -5'
11030 3' -60.9 NC_002794.1 + 132561 0.66 0.782231
Target:  5'- cCGCGgCAUaguaGCcagGACCGGGUgGGCCGc -3'
miRNA:   3'- uGUGUgGUGg---CG---CUGGUCCAgCCGGC- -5'
11030 3' -60.9 NC_002794.1 + 90320 0.66 0.782231
Target:  5'- cGCGCACUgGCCGCaGCUGGuggccGUCGGCCu -3'
miRNA:   3'- -UGUGUGG-UGGCGcUGGUC-----CAGCCGGc -5'
11030 3' -60.9 NC_002794.1 + 93834 0.66 0.782231
Target:  5'- gGC-CAUCGCCGaGAUCAuGGaCGGCCGc -3'
miRNA:   3'- -UGuGUGGUGGCgCUGGU-CCaGCCGGC- -5'
11030 3' -60.9 NC_002794.1 + 62582 0.66 0.782231
Target:  5'- aGCGcCGCCGCCGCcgacGCCAGGgccaCcGCCGc -3'
miRNA:   3'- -UGU-GUGGUGGCGc---UGGUCCa---GcCGGC- -5'
11030 3' -60.9 NC_002794.1 + 66689 0.66 0.776966
Target:  5'- -gGCGCCccaggcaaagcguacGCCGCGcCCGGcaCGGCCGc -3'
miRNA:   3'- ugUGUGG---------------UGGCGCuGGUCcaGCCGGC- -5'
11030 3' -60.9 NC_002794.1 + 187537 0.66 0.776966
Target:  5'- --cCGCCGCCGCGACCGccgccaccgccgccGUCgGGCCc -3'
miRNA:   3'- uguGUGGUGGCGCUGGUc-------------CAG-CCGGc -5'
11030 3' -60.9 NC_002794.1 + 128041 0.66 0.776966
Target:  5'- cGCGgGCCACCGaucaccgcgucgcacCGACCGuGagGGCCGa -3'
miRNA:   3'- -UGUgUGGUGGC---------------GCUGGUcCagCCGGC- -5'
11030 3' -60.9 NC_002794.1 + 52905 0.66 0.773433
Target:  5'- gGCGcCGCCGCCGUcGCCGccgccgucGcUCGGCCGg -3'
miRNA:   3'- -UGU-GUGGUGGCGcUGGU--------CcAGCCGGC- -5'
11030 3' -60.9 NC_002794.1 + 90922 0.66 0.773433
Target:  5'- cGCACggaggACCACgGCGACguGGgcgGGCUGu -3'
miRNA:   3'- -UGUG-----UGGUGgCGCUGguCCag-CCGGC- -5'
11030 3' -60.9 NC_002794.1 + 91721 0.66 0.773433
Target:  5'- cGCGCAUCGCCuucuucucgGCGGCCaacaAGGUgcCGGCgGg -3'
miRNA:   3'- -UGUGUGGUGG---------CGCUGG----UCCA--GCCGgC- -5'
11030 3' -60.9 NC_002794.1 + 99908 0.66 0.773433
Target:  5'- uAC-CGCCACCggaucacgccguGCGGCguGGucuugcggcuguUCGGCCGg -3'
miRNA:   3'- -UGuGUGGUGG------------CGCUGguCC------------AGCCGGC- -5'
11030 3' -60.9 NC_002794.1 + 61512 0.66 0.773433
Target:  5'- cGCcCGCCggACgGCGGCCGccGG-CGGCCGc -3'
miRNA:   3'- -UGuGUGG--UGgCGCUGGU--CCaGCCGGC- -5'
11030 3' -60.9 NC_002794.1 + 145980 0.66 0.773433
Target:  5'- aGCGCGCC-CagaGCGcCCAGaaCGGCCGc -3'
miRNA:   3'- -UGUGUGGuGg--CGCuGGUCcaGCCGGC- -5'
11030 3' -60.9 NC_002794.1 + 180885 0.66 0.773433
Target:  5'- gGCGCGCCcggucucgGCCGCGgacucgGCCGcGGUCucGCCGg -3'
miRNA:   3'- -UGUGUGG--------UGGCGC------UGGU-CCAGc-CGGC- -5'
11030 3' -60.9 NC_002794.1 + 121001 0.66 0.773433
Target:  5'- gGCGgGCCAUgGcCGA--GGGUCGGCCu -3'
miRNA:   3'- -UGUgUGGUGgC-GCUggUCCAGCCGGc -5'
11030 3' -60.9 NC_002794.1 + 186889 0.66 0.773433
Target:  5'- cGCGguCCGgcguCCGCagGACCAGGUucCGGCCc -3'
miRNA:   3'- -UGUguGGU----GGCG--CUGGUCCA--GCCGGc -5'
11030 3' -60.9 NC_002794.1 + 38674 0.66 0.773433
Target:  5'- cGCGCGCgAcCCGCgGACgGGGUCaccGCCGc -3'
miRNA:   3'- -UGUGUGgU-GGCG-CUGgUCCAGc--CGGC- -5'
11030 3' -60.9 NC_002794.1 + 71587 0.66 0.772547
Target:  5'- cGCGCuuCCACUGCGGCUGGG-CGaacagcaGCCGc -3'
miRNA:   3'- -UGUGu-GGUGGCGCUGGUCCaGC-------CGGC- -5'
11030 3' -60.9 NC_002794.1 + 60770 0.66 0.764522
Target:  5'- -aGCGCCGCCGCcGCCGucgaacGGaCGGCuCGg -3'
miRNA:   3'- ugUGUGGUGGCGcUGGU------CCaGCCG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.