miRNA display CGI


Results 1 - 20 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11030 3' -60.9 NC_002794.1 + 675 0.7 0.555303
Target:  5'- aGCAUuuuCCuguucuUCGCGGCCGGaGUCGGCUGu -3'
miRNA:   3'- -UGUGu--GGu-----GGCGCUGGUC-CAGCCGGC- -5'
11030 3' -60.9 NC_002794.1 + 786 0.67 0.727904
Target:  5'- gGCACgguGCCaACCGUGccguCCGGG-CGGUCGg -3'
miRNA:   3'- -UGUG---UGG-UGGCGCu---GGUCCaGCCGGC- -5'
11030 3' -60.9 NC_002794.1 + 1406 0.66 0.763625
Target:  5'- gACAcCGCCACCGaccuuauaagggaCGACCGGGagGGggaCCGg -3'
miRNA:   3'- -UGU-GUGGUGGC-------------GCUGGUCCagCC---GGC- -5'
11030 3' -60.9 NC_002794.1 + 10335 0.68 0.641927
Target:  5'- uCGuCGgCGCCGCGACCGGGUgaCGGaCUGc -3'
miRNA:   3'- uGU-GUgGUGGCGCUGGUCCA--GCC-GGC- -5'
11030 3' -60.9 NC_002794.1 + 12185 0.78 0.199946
Target:  5'- -gACGCCGCCGCGGCCGGG-C-GCCGc -3'
miRNA:   3'- ugUGUGGUGGCGCUGGUCCaGcCGGC- -5'
11030 3' -60.9 NC_002794.1 + 12719 0.67 0.718544
Target:  5'- uGCGCGuuCCGCgGCGACgAGGgccCGGuCCGc -3'
miRNA:   3'- -UGUGU--GGUGgCGCUGgUCCa--GCC-GGC- -5'
11030 3' -60.9 NC_002794.1 + 13862 0.71 0.463559
Target:  5'- cGC-CGCCGCCGCGACCcGGUUcuCCGa -3'
miRNA:   3'- -UGuGUGGUGGCGCUGGuCCAGccGGC- -5'
11030 3' -60.9 NC_002794.1 + 14603 0.73 0.38824
Target:  5'- aGCGCGCCgggcACCGCGACgGGGcCGGagaCGg -3'
miRNA:   3'- -UGUGUGG----UGGCGCUGgUCCaGCCg--GC- -5'
11030 3' -60.9 NC_002794.1 + 16303 0.67 0.731627
Target:  5'- cCugGCgGCCGCGGCCGGcUggaucccccugccccUGGCCGg -3'
miRNA:   3'- uGugUGgUGGCGCUGGUCcA---------------GCCGGC- -5'
11030 3' -60.9 NC_002794.1 + 16358 0.71 0.480424
Target:  5'- -gGCGCCAcccgcacCCGCGugCAcGG-CGGCCGg -3'
miRNA:   3'- ugUGUGGU-------GGCGCugGU-CCaGCCGGC- -5'
11030 3' -60.9 NC_002794.1 + 17281 0.71 0.470623
Target:  5'- gGCACGCCGCCGCcgacggucacgacGAUCAcgacggugacgacGGUCaGGCCGc -3'
miRNA:   3'- -UGUGUGGUGGCG-------------CUGGU-------------CCAG-CCGGC- -5'
11030 3' -60.9 NC_002794.1 + 17405 0.7 0.555303
Target:  5'- cCGCcgaaGCCACCGCGGCCAucgcGGUCuccgcGCCGc -3'
miRNA:   3'- uGUG----UGGUGGCGCUGGU----CCAGc----CGGC- -5'
11030 3' -60.9 NC_002794.1 + 17482 0.67 0.727904
Target:  5'- cACACGCCGCguuUGCGAUCGccgacGcCGGCCGa -3'
miRNA:   3'- -UGUGUGGUG---GCGCUGGUc----CaGCCGGC- -5'
11030 3' -60.9 NC_002794.1 + 17666 0.67 0.737189
Target:  5'- cGC-CGCCACCGCcGCCGGcccCGGCgGa -3'
miRNA:   3'- -UGuGUGGUGGCGcUGGUCca-GCCGgC- -5'
11030 3' -60.9 NC_002794.1 + 17921 0.7 0.536431
Target:  5'- aGCuCACCACCGgccggcucccCGACCuGG-CGGCCa -3'
miRNA:   3'- -UGuGUGGUGGC----------GCUGGuCCaGCCGGc -5'
11030 3' -60.9 NC_002794.1 + 18188 0.7 0.527078
Target:  5'- --cCGCCACCGCGACgAGGcCGacGCCu -3'
miRNA:   3'- uguGUGGUGGCGCUGgUCCaGC--CGGc -5'
11030 3' -60.9 NC_002794.1 + 19423 0.73 0.380379
Target:  5'- gGCGCGCCcuccuCCGCGACCAGGccccgagCGGgCa -3'
miRNA:   3'- -UGUGUGGu----GGCGCUGGUCCa------GCCgGc -5'
11030 3' -60.9 NC_002794.1 + 20150 0.7 0.545841
Target:  5'- uGCcUACCACCGCcGCCuGG-CGGCCc -3'
miRNA:   3'- -UGuGUGGUGGCGcUGGuCCaGCCGGc -5'
11030 3' -60.9 NC_002794.1 + 22169 0.66 0.755506
Target:  5'- -aGCACCGgCGCu-CCAcGGaCGGCCGg -3'
miRNA:   3'- ugUGUGGUgGCGcuGGU-CCaGCCGGC- -5'
11030 3' -60.9 NC_002794.1 + 22557 0.68 0.641927
Target:  5'- --cCGCCACCGcCGACaCGGcaCGGCCGc -3'
miRNA:   3'- uguGUGGUGGC-GCUG-GUCcaGCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.