miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11031 3' -60.3 NC_002794.1 + 150848 0.66 0.819459
Target:  5'- uCCAGcGgCGGcCGCGUcuacgccuauaGCCGGcGCAGCg -3'
miRNA:   3'- -GGUC-CgGCUcGUGCA-----------CGGCCaCGUCG- -5'
11031 3' -60.3 NC_002794.1 + 91277 0.66 0.819459
Target:  5'- aCCGGcGCgGccuGUACGUGUCGGcGCugAGCg -3'
miRNA:   3'- -GGUC-CGgCu--CGUGCACGGCCaCG--UCG- -5'
11031 3' -60.3 NC_002794.1 + 41186 0.66 0.819459
Target:  5'- -gAGGCCGAGCGuCGUcGUcaCGGcGCuGCu -3'
miRNA:   3'- ggUCCGGCUCGU-GCA-CG--GCCaCGuCG- -5'
11031 3' -60.3 NC_002794.1 + 110518 0.66 0.819459
Target:  5'- --cGGUCGAGaucgGCGUGCgGGagaacGCGGCg -3'
miRNA:   3'- gguCCGGCUCg---UGCACGgCCa----CGUCG- -5'
11031 3' -60.3 NC_002794.1 + 114188 0.66 0.819459
Target:  5'- gCCAGGCgcaGcGGCGCcacgGCCGGcgucuccgGCGGCa -3'
miRNA:   3'- -GGUCCGg--C-UCGUGca--CGGCCa-------CGUCG- -5'
11031 3' -60.3 NC_002794.1 + 117342 0.66 0.819459
Target:  5'- gCAGcgaGCUGAGCACGaucucGuuGGaGCGGCg -3'
miRNA:   3'- gGUC---CGGCUCGUGCa----CggCCaCGUCG- -5'
11031 3' -60.3 NC_002794.1 + 143538 0.66 0.819459
Target:  5'- uCCAGGaggcgcggcaCGAGCACGgugGCCcagccGUGCGcGCc -3'
miRNA:   3'- -GGUCCg---------GCUCGUGCa--CGGc----CACGU-CG- -5'
11031 3' -60.3 NC_002794.1 + 106348 0.66 0.819459
Target:  5'- gCCGGGUCGAcgGCggGCGggcGCCGGUucgcGCGGa -3'
miRNA:   3'- -GGUCCGGCU--CG--UGCa--CGGCCA----CGUCg -5'
11031 3' -60.3 NC_002794.1 + 92715 0.66 0.819459
Target:  5'- aCCGuGUCGAGCcuguCGcGCUGGcugcUGCAGCa -3'
miRNA:   3'- -GGUcCGGCUCGu---GCaCGGCC----ACGUCG- -5'
11031 3' -60.3 NC_002794.1 + 111732 0.66 0.819459
Target:  5'- gCGGGCgaacgcgcucguCGAGCugGcGCCGc-GCGGCg -3'
miRNA:   3'- gGUCCG------------GCUCGugCaCGGCcaCGUCG- -5'
11031 3' -60.3 NC_002794.1 + 124383 0.66 0.819459
Target:  5'- gCCucGGUCGcggcGGCGCGUcGCCGGUcGUcggGGCg -3'
miRNA:   3'- -GGu-CCGGC----UCGUGCA-CGGCCA-CG---UCG- -5'
11031 3' -60.3 NC_002794.1 + 119632 0.66 0.819459
Target:  5'- --cGGCCGucgucAGCACGgcuucGUCGGU-CAGCg -3'
miRNA:   3'- gguCCGGC-----UCGUGCa----CGGCCAcGUCG- -5'
11031 3' -60.3 NC_002794.1 + 103751 0.66 0.816997
Target:  5'- uCCAGGuCCGGGUacuccucgaagaugGCGUGCaucuccgGCGGCu -3'
miRNA:   3'- -GGUCC-GGCUCG--------------UGCACGgcca---CGUCG- -5'
11031 3' -60.3 NC_002794.1 + 32018 0.66 0.811197
Target:  5'- aCCAGGCagGGGaCGCGgcgcUGCCGauacaGCGGCg -3'
miRNA:   3'- -GGUCCGg-CUC-GUGC----ACGGCca---CGUCG- -5'
11031 3' -60.3 NC_002794.1 + 194128 0.66 0.811197
Target:  5'- gCAcGGCUGAGgcaGCG-GCCGcaGCAGCg -3'
miRNA:   3'- gGU-CCGGCUCg--UGCaCGGCcaCGUCG- -5'
11031 3' -60.3 NC_002794.1 + 139474 0.66 0.807851
Target:  5'- gCCAGGacggugguguagaUGGGCGCGgGCgCGcUGCAGCa -3'
miRNA:   3'- -GGUCCg------------GCUCGUGCaCG-GCcACGUCG- -5'
11031 3' -60.3 NC_002794.1 + 120243 0.66 0.802788
Target:  5'- aCCAGGCCGuGUacACGcGCUucuucGUGCAGg -3'
miRNA:   3'- -GGUCCGGCuCG--UGCaCGGc----CACGUCg -5'
11031 3' -60.3 NC_002794.1 + 123511 0.66 0.802788
Target:  5'- ---cGCCGGGC---UGCCGGccUGCAGCu -3'
miRNA:   3'- ggucCGGCUCGugcACGGCC--ACGUCG- -5'
11031 3' -60.3 NC_002794.1 + 129256 0.66 0.802788
Target:  5'- cUCGGGUCGAGCgccucgucgugaGCGgGCCGGUcucuCGGUg -3'
miRNA:   3'- -GGUCCGGCUCG------------UGCaCGGCCAc---GUCG- -5'
11031 3' -60.3 NC_002794.1 + 120071 0.66 0.802788
Target:  5'- -gAGGCCGA-CGCG-G-CGGUgGCGGCg -3'
miRNA:   3'- ggUCCGGCUcGUGCaCgGCCA-CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.