miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11031 5' -55.6 NC_002794.1 + 93989 0.66 0.939653
Target:  5'- -cGCU-CGGCGcgGACGCCGgcgCCGGc- -3'
miRNA:   3'- gaCGAcGUCGCa-CUGCGGCa--GGUUuu -5'
11031 5' -55.6 NC_002794.1 + 108193 0.66 0.939653
Target:  5'- aCUGCgaGCGGCGcuGCGCCG-CCGc-- -3'
miRNA:   3'- -GACGa-CGUCGCacUGCGGCaGGUuuu -5'
11031 5' -55.6 NC_002794.1 + 90475 0.66 0.939653
Target:  5'- -cGC-GCGGCGgGGcCGCCGUCCc--- -3'
miRNA:   3'- gaCGaCGUCGCaCU-GCGGCAGGuuuu -5'
11031 5' -55.6 NC_002794.1 + 141427 0.66 0.939653
Target:  5'- -gGggGCGGCGggGGCGCCGggggcgCCGGGAg -3'
miRNA:   3'- gaCgaCGUCGCa-CUGCGGCa-----GGUUUU- -5'
11031 5' -55.6 NC_002794.1 + 48024 0.66 0.939653
Target:  5'- -aGCUuCGGCGUcACGCCGgacgCCGAGu -3'
miRNA:   3'- gaCGAcGUCGCAcUGCGGCa---GGUUUu -5'
11031 5' -55.6 NC_002794.1 + 53060 0.66 0.934802
Target:  5'- -aGCguagGCAGCGccGCGCCG-CCAGc- -3'
miRNA:   3'- gaCGa---CGUCGCacUGCGGCaGGUUuu -5'
11031 5' -55.6 NC_002794.1 + 18705 0.66 0.92971
Target:  5'- -gGCgGCGGCGguccgGACGUCGgagCCGAc- -3'
miRNA:   3'- gaCGaCGUCGCa----CUGCGGCa--GGUUuu -5'
11031 5' -55.6 NC_002794.1 + 99380 0.66 0.92971
Target:  5'- -gGgaGguGCcgacgaugGUGGCGCCGUCCGc-- -3'
miRNA:   3'- gaCgaCguCG--------CACUGCGGCAGGUuuu -5'
11031 5' -55.6 NC_002794.1 + 109387 0.66 0.929188
Target:  5'- uCUGCUGCGgaugcuggcgaucGCGcGACGCCGgcCCGu-- -3'
miRNA:   3'- -GACGACGU-------------CGCaCUGCGGCa-GGUuuu -5'
11031 5' -55.6 NC_002794.1 + 144664 0.66 0.924378
Target:  5'- cCUGCugUGCAaCGUGACGuUCGUCCu--- -3'
miRNA:   3'- -GACG--ACGUcGCACUGC-GGCAGGuuuu -5'
11031 5' -55.6 NC_002794.1 + 78002 0.66 0.918805
Target:  5'- -cGUUGUuccGGCGgcGGCGCCGUCgGGAGa -3'
miRNA:   3'- gaCGACG---UCGCa-CUGCGGCAGgUUUU- -5'
11031 5' -55.6 NC_002794.1 + 122321 0.66 0.912991
Target:  5'- -cGCcgUGC-GCGUGGCguuggcccugGCCGUCCGGAGc -3'
miRNA:   3'- gaCG--ACGuCGCACUG----------CGGCAGGUUUU- -5'
11031 5' -55.6 NC_002794.1 + 11999 0.67 0.906939
Target:  5'- uUGCUGCuGUGUGgacugauguGCGCCG-CCGGc- -3'
miRNA:   3'- gACGACGuCGCAC---------UGCGGCaGGUUuu -5'
11031 5' -55.6 NC_002794.1 + 21932 0.67 0.906939
Target:  5'- -gGCgGCGGCGcGGCGCuCGUCgAAGg -3'
miRNA:   3'- gaCGaCGUCGCaCUGCG-GCAGgUUUu -5'
11031 5' -55.6 NC_002794.1 + 67425 0.67 0.906939
Target:  5'- -aGCgucgGCGGCGUGucGCGCCGcUUCGGGc -3'
miRNA:   3'- gaCGa---CGUCGCAC--UGCGGC-AGGUUUu -5'
11031 5' -55.6 NC_002794.1 + 58351 0.67 0.906939
Target:  5'- cCUGCcGCucGGCcUGGCGCCGcCCGAc- -3'
miRNA:   3'- -GACGaCG--UCGcACUGCGGCaGGUUuu -5'
11031 5' -55.6 NC_002794.1 + 57157 0.67 0.906939
Target:  5'- -cGCUGCuGCGcaaGGCGCCG-CCGc-- -3'
miRNA:   3'- gaCGACGuCGCa--CUGCGGCaGGUuuu -5'
11031 5' -55.6 NC_002794.1 + 102503 0.67 0.90065
Target:  5'- cCUGUUGCAGCGgcUGGCGCgCG-CgCGGGAc -3'
miRNA:   3'- -GACGACGUCGC--ACUGCG-GCaG-GUUUU- -5'
11031 5' -55.6 NC_002794.1 + 36011 0.67 0.90065
Target:  5'- -gGCUcggGCGGCG-GAaucCGCCGUCCGGc- -3'
miRNA:   3'- gaCGA---CGUCGCaCU---GCGGCAGGUUuu -5'
11031 5' -55.6 NC_002794.1 + 188780 0.67 0.886685
Target:  5'- -cGgUGCAGCGguagcgGccggccccgccgaGCGCCGUCCAGGc -3'
miRNA:   3'- gaCgACGUCGCa-----C-------------UGCGGCAGGUUUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.