miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11033 3' -54.8 NC_002794.1 + 44243 0.66 0.964236
Target:  5'- cCGGGCGGCucgguGCcgGGCgGCUCGGCcGCc -3'
miRNA:   3'- -GCUCGUUG-----CGa-CCGaCGAGCUGaUGu -5'
11033 3' -54.8 NC_002794.1 + 57328 0.66 0.96357
Target:  5'- --uGCAGCGCguccugcugcaGCUGCUCGACgcCAg -3'
miRNA:   3'- gcuCGUUGCGac---------CGACGAGCUGauGU- -5'
11033 3' -54.8 NC_002794.1 + 143377 0.66 0.962212
Target:  5'- gGGGCAGauaggagagggucaGCU-GCUGCUCGACcgGCGc -3'
miRNA:   3'- gCUCGUUg-------------CGAcCGACGAGCUGa-UGU- -5'
11033 3' -54.8 NC_002794.1 + 37881 0.66 0.957181
Target:  5'- uCGGGCGGCGggGGCggugGCggCGGCaGCGg -3'
miRNA:   3'- -GCUCGUUGCgaCCGa---CGa-GCUGaUGU- -5'
11033 3' -54.8 NC_002794.1 + 52796 0.66 0.957181
Target:  5'- uCGAGCcgcucgucgGACGCcGGCaGCUCGucCUGCc -3'
miRNA:   3'- -GCUCG---------UUGCGaCCGaCGAGCu-GAUGu -5'
11033 3' -54.8 NC_002794.1 + 128148 0.66 0.957181
Target:  5'- aGaAGCGACGCgacGGCgGCUCGcGCcGCGg -3'
miRNA:   3'- gC-UCGUUGCGa--CCGaCGAGC-UGaUGU- -5'
11033 3' -54.8 NC_002794.1 + 143481 0.66 0.956805
Target:  5'- -uGGCAGacgauguCGCUGGCcGCggGGCUGCAg -3'
miRNA:   3'- gcUCGUU-------GCGACCGaCGagCUGAUGU- -5'
11033 3' -54.8 NC_002794.1 + 55276 0.66 0.95332
Target:  5'- gGGGCGGCGgUGGCgGCgacgagggCGGCgGCGg -3'
miRNA:   3'- gCUCGUUGCgACCGaCGa-------GCUGaUGU- -5'
11033 3' -54.8 NC_002794.1 + 128089 0.66 0.95332
Target:  5'- cCGAGuCGGCGacgGGgaGCUCGACgggggGCu -3'
miRNA:   3'- -GCUC-GUUGCga-CCgaCGAGCUGa----UGu -5'
11033 3' -54.8 NC_002794.1 + 150941 0.66 0.95332
Target:  5'- --cGCGgucuGCGCUGGgUGUUCGAgauCUACGa -3'
miRNA:   3'- gcuCGU----UGCGACCgACGAGCU---GAUGU- -5'
11033 3' -54.8 NC_002794.1 + 138433 0.66 0.95332
Target:  5'- uCGAGCcGCGgUGGCggcgGCgccUCGGcCUGCGa -3'
miRNA:   3'- -GCUCGuUGCgACCGa---CG---AGCU-GAUGU- -5'
11033 3' -54.8 NC_002794.1 + 179701 0.67 0.940356
Target:  5'- -cGGCGACGgUGGCgacGCcggCGGCUACc -3'
miRNA:   3'- gcUCGUUGCgACCGa--CGa--GCUGAUGu -5'
11033 3' -54.8 NC_002794.1 + 92421 0.67 0.940356
Target:  5'- cCGAGCAcgggcgaggacACGCUGGCcgUGCggGGCcGCGc -3'
miRNA:   3'- -GCUCGU-----------UGCGACCG--ACGagCUGaUGU- -5'
11033 3' -54.8 NC_002794.1 + 60319 0.67 0.93751
Target:  5'- uGGGCGACGUccucuacaaccUGGCgcaccgcgaccgcCUCGGCUACAa -3'
miRNA:   3'- gCUCGUUGCG-----------ACCGac-----------GAGCUGAUGU- -5'
11033 3' -54.8 NC_002794.1 + 123504 0.67 0.935565
Target:  5'- uGuGCAuCGCcgGGCUGC-CGGcCUGCAg -3'
miRNA:   3'- gCuCGUuGCGa-CCGACGaGCU-GAUGU- -5'
11033 3' -54.8 NC_002794.1 + 119447 0.67 0.935565
Target:  5'- -cGGCGGCGgUGGCgGCgUCGACUuCGa -3'
miRNA:   3'- gcUCGUUGCgACCGaCG-AGCUGAuGU- -5'
11033 3' -54.8 NC_002794.1 + 130457 0.67 0.930537
Target:  5'- uGGGCGgcgagGCGCUGGCgGCUUGcgUGCGc -3'
miRNA:   3'- gCUCGU-----UGCGACCGaCGAGCugAUGU- -5'
11033 3' -54.8 NC_002794.1 + 57868 0.67 0.930537
Target:  5'- cCGAcGCGGCGCUGcacaGCUGCccgUCGcCUGCu -3'
miRNA:   3'- -GCU-CGUUGCGAC----CGACG---AGCuGAUGu -5'
11033 3' -54.8 NC_002794.1 + 61160 0.67 0.928982
Target:  5'- cCGAGCGcgcgguccggaucgGCgGCUGGUcGCUCGuGCUGCc -3'
miRNA:   3'- -GCUCGU--------------UG-CGACCGaCGAGC-UGAUGu -5'
11033 3' -54.8 NC_002794.1 + 147257 0.67 0.92527
Target:  5'- cCGGGCAGaCGCUcGaGCUGCcguggccgucCGGCUGCAc -3'
miRNA:   3'- -GCUCGUU-GCGA-C-CGACGa---------GCUGAUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.