Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11033 | 3' | -54.8 | NC_002794.1 | + | 150210 | 0.72 | 0.686135 |
Target: 5'- aCGAGCGGCuGCUGccgaGCUGCgugCGACgGCAg -3' miRNA: 3'- -GCUCGUUG-CGAC----CGACGa--GCUGaUGU- -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 124528 | 0.71 | 0.745642 |
Target: 5'- gGAGCcgccGACGCUGGC-GCUgCGGCUGa- -3' miRNA: 3'- gCUCG----UUGCGACCGaCGA-GCUGAUgu -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 157650 | 0.71 | 0.745642 |
Target: 5'- cCGAGCAcgaucccgacGCGCUGGCggcuugggccGCUUGGCgUGCAc -3' miRNA: 3'- -GCUCGU----------UGCGACCGa---------CGAGCUG-AUGU- -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 90673 | 0.71 | 0.755266 |
Target: 5'- gGGGCcggcCGCgUGGCUGUUCGugUGCc -3' miRNA: 3'- gCUCGuu--GCG-ACCGACGAGCugAUGu -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 92721 | 0.71 | 0.77418 |
Target: 5'- uCGAGCcugucGCGCUGGCUGCU--GCaGCAc -3' miRNA: 3'- -GCUCGu----UGCGACCGACGAgcUGaUGU- -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 15005 | 0.7 | 0.792588 |
Target: 5'- uCGGGCggUcucgGCUGGCUGCUCGuCg--- -3' miRNA: 3'- -GCUCGuuG----CGACCGACGAGCuGaugu -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 32252 | 0.7 | 0.835936 |
Target: 5'- --uGCAGCuGCUGGC-GCUCGACgGCc -3' miRNA: 3'- gcuCGUUG-CGACCGaCGAGCUGaUGu -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 30826 | 0.69 | 0.859791 |
Target: 5'- uCGAaCGACGuCUGGCUGgUCGGCggagGCu -3' miRNA: 3'- -GCUcGUUGC-GACCGACgAGCUGa---UGu -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 147413 | 0.69 | 0.87468 |
Target: 5'- aCGAGCGcuACGCguacccGCUGCUgcuggaCGGCUACGg -3' miRNA: 3'- -GCUCGU--UGCGac----CGACGA------GCUGAUGU- -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 184504 | 0.68 | 0.895381 |
Target: 5'- cCGGGCGGCGCgGGCcccGCgcgCGGCgcggGCGa -3' miRNA: 3'- -GCUCGUUGCGaCCGa--CGa--GCUGa---UGU- -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 137990 | 0.68 | 0.901828 |
Target: 5'- --cGCAGCGCUGGUgcaGCUgGGCgcGCAg -3' miRNA: 3'- gcuCGUUGCGACCGa--CGAgCUGa-UGU- -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 15274 | 0.68 | 0.901828 |
Target: 5'- gCGAGCcGCGC-GGCUcccuccgcGCgagCGACUACu -3' miRNA: 3'- -GCUCGuUGCGaCCGA--------CGa--GCUGAUGu -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 148630 | 0.68 | 0.908042 |
Target: 5'- uGGGUcuccgauCGCggcGGCgUGCUCGGCUACGc -3' miRNA: 3'- gCUCGuu-----GCGa--CCG-ACGAGCUGAUGU- -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 127363 | 0.67 | 0.919765 |
Target: 5'- -cGGCGGCGC-GGCcGCUCGugUcgGCGg -3' miRNA: 3'- gcUCGUUGCGaCCGaCGAGCugA--UGU- -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 149668 | 0.67 | 0.92527 |
Target: 5'- cCGAGCGgggGCGCgucGC-GCUCGACUGg- -3' miRNA: 3'- -GCUCGU---UGCGac-CGaCGAGCUGAUgu -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 38162 | 0.67 | 0.92527 |
Target: 5'- gCGAGCAG-GC-GGCUgcGCUCGGCgACGa -3' miRNA: 3'- -GCUCGUUgCGaCCGA--CGAGCUGaUGU- -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 14514 | 0.67 | 0.92527 |
Target: 5'- --cGCGGCGCucgUGGCgccGCUCGGCcACGg -3' miRNA: 3'- gcuCGUUGCG---ACCGa--CGAGCUGaUGU- -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 131029 | 0.67 | 0.92527 |
Target: 5'- uCGuGCGGCGCggccGGCUGCcgccgauguucgUCGACgACGa -3' miRNA: 3'- -GCuCGUUGCGa---CCGACG------------AGCUGaUGU- -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 38637 | 0.67 | 0.92527 |
Target: 5'- cCGGuGCGGCGCgacGGagGCUCGACUAUu -3' miRNA: 3'- -GCU-CGUUGCGa--CCgaCGAGCUGAUGu -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 147257 | 0.67 | 0.92527 |
Target: 5'- cCGGGCAGaCGCUcGaGCUGCcguggccgucCGGCUGCAc -3' miRNA: 3'- -GCUCGUU-GCGA-C-CGACGa---------GCUGAUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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